Detail information of GWHGAAEX002911/evm.TU.scaffold_127.85


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG34397.00E-38Protein conjugation factor involved in autophagy
nrgi|695043082|ref|XP_009409219.1|5.43E-41PREDICTED: ubiquitin-like protein ATG12 isoform X1 [Musa acuminata subsp. malaccensis]
Swissprottr|Q1SF86|ATG12_MEDTR2.00E-41Ubiquitin-like protein ATG12
trEMBLtr|M0TGV4|M0TGV4_MUSAM2.00E-41Ubiquitin-like protein ATG12 {ECO:0000256|RuleBase:RU361201}
TAIRAT1G542107.00E-38Ubiquitin-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000014128985572918702+
Transcript Sequence

Network for GWHGAAEX002911

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04110.12APG12871591.10E-23
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08336ATG12 FoxO signaling pathway map04068
Autophagy - animalmap04140
Autophagy - yeastmap04138
Autophagy - othermap04136
NOD-like receptor signaling pathwaymap04621
RIG-I-like receptor signaling pathwaymap04622

Gene Ontology

GO term OntologyName
GO:0000045Biological Processautophagosome assembly
GO:0005737Cellular Componentcytoplasm

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms13.130
SRR2545915Juvenile tuber22.340
SRP108465SRR5643513five period of Gastrodia elata9.950
SRR5643514five period of Gastrodia elata11.610
SRR5643515five period of Gastrodia elata12.830
SRR5643524five period of Gastrodia elata9.450
SRR5643525five period of Gastrodia elata13.910
SRR5643528five period of Gastrodia elata12.810
SRR5643658five period of Gastrodia elata10.500
SRR5643659five period of Gastrodia elata13.020
SRR5643660five period of Gastrodia elata11.100
SRR5643661five period of Gastrodia elata12.280
SRR5643662five period of Gastrodia elata15.990
SRR5643663five period of Gastrodia elata14.100
SRR5643664five period of Gastrodia elata13.960
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_110.760
SRR6049655Rhizomagastrodiae_C368-T10_good_13.430
SRR6049656Rhizomagastrodiae_C368-T07_good_112.310
SRR6049657Rhizomagastrodiae_C368-T07_good_19.570
SRR6049658Rhizomagastrodiae_C368-T04_good_16.800
SRR6049659Rhizomagastrodiae_C368-T04_good_18.330
SRR6049660Rhizomagastrodiae_C368-T01_good_18.690
SRR6049661Rhizomagastrodiae_C368-T04_good_19.550
SRR6049662Rhizomagastrodiae_C368-T01_good_18.290
SRR6049663Rhizomagastrodiae_C368-T01_good_19.550
SRR6049664Rhizomagastrodiae_C368-T10_good_19.820
SRR6049665Rhizomagastrodiae_C368-T10_good_19.820
SRP279888GastroGastrodia elata tuber 13.69
JuvenJuvenile tuber14.51
Mother_GastroMother tuber of Gastrodia elata 6.21
Mother_JuvenMother tuber of Juvenile 7.59