Gene detail

Detail information of GWHGAAEX002918/evm.TU.scaffold_128.4

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|514799916\|ref\|XP_004974895.1\|	0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Setaria italica]
Swissprot	tr\|Q9SZL8\|FRS5_ARATH	1.00E-98	Protein FAR1-RELATED SEQUENCE 5
trEMBL	tr\|M8A192\|M8A192_TRIUA	0	Vacuolar protein sorting-associated protein 11-like protein {ECO:0000313\|EMBL:EMS54139.1}
TAIR	AT4G38180	4.00E-98	FAR1-related sequence 5

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000130	225609	269095	+

Transcript Sequence
>GWHTAAEX002918 GTCGCCGCCTTCGCCGCCTTCGCCAAGACGCACGGAAGGATATAGTCTAATTCCATTTTAATGGCTTCCCCATCAAAATGTTCTTCAAGGAACATGCTGCATCAACAAACCTTTGAGGGACATCATCTATTGAACGCACAAAAGTCAGTTCAGTTGCAAACAATGTAAAGCTTCAGTGCCAGTAATCCCAGTGCATGTGAGACATATGTTGATGCATATAAATGTACAGACAACGGATTGGATATGGTTCATGAATCTAGAGAACTTTGCTCTGTTGCGCTTTATGAATGCAGCAATGGCGATTCAGGGCAAGTTGCACTTTCCTGTCCTGATGATTGGACTCCAAAGGTTGATATGGAGTTTGAAACTGAACAAGAGGCATATGATTTCTACAATAGATATGCATTTGAGATGGGATTCTCAATTCGTAGGAGCTCCAGACACTTGTTGAGGAAAGGAGGTGAAGTAAAAGATAGGACTTTCTGTTGTTCCCGAGAAGGTATTCGTGGGAAAGATAAGAGAAAGGAGAATGTGCAGCATCCTCGTTATGAAACAAGGTGTAATTGCAATGCAAAGTTGAAGATAAGTCTACGGAACGGTAAATATTACGTGTTTCAGTTTATACCCGAGCATAATCATGAACTTGCTACCCGTACTCAGGTGCATCGGTTGCGATCACATAGGCATATAACTCCAACTCAGACAGTGACAAATGCTGGGATCTCTCCAAAGCCAACTTTTGATTTAATGTCCACAGATGTTGATGGCCAAGAAAATCTTGGGTTCATCCTTGATTTTGGTAATGATTTGCAAGTTGAGCAGCCTTTGGCCATCAAAGTTGGTGATGGTGGTGTAATTGAATATCTGGAAAAGATGCAACTTGAAGATCCGAAGTTCTTTTATTCTGTGCAAGTAGATAAGTTGCATACAACTACAAATATCTTTTGGTCAGATTCAAGGATGATAACTGATTATGAAAATTTTGGAGATGTTGTCTGCTTTGATACGACTAATAGAAGATTTAATGACAACAGGTTGTTTGGAATTTTTCTTGGTGTGAATAACCATAAGCAAGTCATCGTGTTTGGTGTTACCTTCTTACATGATGAAACGATGGAATCCTTTAAGTGGATTTTTAGTTCGTTTCTTAAGGCGATGTCAGGAAAAAAACCAAGAACGGTTCTTGTAAATGAAGATATTGCCATTGCTAAAGCACTTAAGATGTGTATGCCAGGGGTTAGTCAACGTATCTGTGCTTGGCAAATTTATCAGAATATATGCAGGCAGCTTGGAGAGGTGGTTGTAGATTATAAAAGCTTTTGCCTTGATCTCTGTAGTTGTATACATGAACACGATGAAGAGGCGACATTTATAGATTCTTGGAATGCGATGGTTGTAAAATATAAACTTATCGGGAATGCTTACCTTCATAGGCTATTTGAGAAGAAGGAGCATTGGGCTTTGGTTTATGGACGAAATGTATTTTATGCAGGTATATGTGGATCGCTGAAAAGCGAAAGCATGAGCAAAGAACTAAAGAATTTCCTTAGTATTAATAACGATATATTAATGTTCTTTAAACATCTTGGAAGGTTGGTTCAGGATCGAAGATATGAAGAATTAAAGTCTGATTTTACATCTAACCAAAGCACTCCAAAACTAAAGTTCAACTTGGGAATCTTAAAGCATGCAGTTAGAATGTATACACCGGCCATATTCAAGATGTTCCAGGATGAAGTTCTGCAAACATGGAATTGTGATATGCACTTTTTTAGTGAGATGGGATCCATTAGCACCTACAAATTGAAAACTAATGGGAAAATCGAAGAGCACACAGTTATTTATGATTCTTCAAAGGGCTCAGTTGAATGCAGCTGCAAAAATTTTGATTATGTGGGGATGCTATGCACTCATTCTTTGAAAGTACTTGATTTTAAAAACATCAGGACAATTCCCGAATGCTATTTAATAAAGAGATGGATGAAGGATGCAAAGGCAGCAGGCTTTGCTGGAACATGTGCGCCTCGTCTTGACCCGAAGGTAGAGCTAAGAAGGCGTTACAAAGAACTTTGTCGCTTATTTGTTCAGGTGGCAGCAAAAGCAGCTGAGACTGAAGAAACTTATGCAATTGCTGCAGGCCAGGTTAGTAAACTGCTGCAAGAAATAGAAAAGAGATTAAAAAAAAGGTCTAAGCCTGATCTAGAAGGAGATAGTGCTGAATTGAATAGTTTGGAAGCTGAATTAGGTCAAGCTGATGATGGTGGCATTTCAAGCAGAGAATACATGCAGTCCAGAAAATTGAAAGGAATGAAGCACATGCCTAACAAAAAGAAGAAGAAAATCCGGCGTTGCCTGCAAGTTTCTGTTGGCACTGTTGAACAAAATGCTTCAGATATTCACTTAGATAAAGATCTTTGTCACCCCGGAAGTGACCAACTGCAGAGAAGTGCATCAGCTGCCTTGGGAAGAGAAGATCCGCAGGATAATTTTACTCGTTCGCACCCTCAAGCTTCAAATGAACACTTGTGGCTTGACCTGTCCCAGCCTCCTCCTGTTGGTTCCCACACTAGCCTTATTGCAGATAGTTTCCAGCTTCATGCTGTTCAATCTGTTCAAACTAATTCTTTCTCTCACGGAATTTATCATATTCATAATACGAGCACTGGCATTCCTCTCAGCCAGCAAGGGCATCTGAACATGCTGCAACAATTTGAGCCACAGATACACAGCTTAAGTAGGCAACTATTTTCAGGCTCTGCTGAGGGTTAAGACATCATCTGCAGCAAGCTCAGAAGGCTCTAACAATCATAGCGGTAGCAATATCTGCAGTTCTCTTCAAAAGCCTAGAACTCAGCAGAATCATTGAATATATGTGAGATCGATCTATAGGAGGTCACTATATACTGCACTAATATTTTAGTTGGTAGATGTTGTATACAGTTTAGGTCTATAGGATAATGCATGCTATGTTGCCTCGAGAGATTATCTCCCAAAAATATTGATAGCAAGGCATTGTAGAGATATGCATCAAAATATAGAGAAGAAAAAAGTTGGGCCTAAAGGAAAAGCTCATTATCATCTACTTCATATCATCATCACACAGGAATATGGATTCATCAAATTTTTTTTTGAAAATATTAGTTGAGTGTTATAGCTAAGTCCTTCCAGAAAATGTTAGTAGCACTATCTTTTGATGAGAGTAAATCGAAGCATGTTGTATAAAAGAAGAATTGACTAATAATTCAAGTAATGAATGGCTATG

Network for GWHGAAEX002918

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03101.14	FAR1	48	135	6.90E-24
PF10551.8	MULE	250	344	9.30E-18

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	FAR1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0008270	Molecular Function	zinc ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	33.590
SRP064423	SRR2545915	Juvenile tuber	30.680
SRP108465	SRR5643513	five period of Gastrodia elata	17.140
	SRR5643514	five period of Gastrodia elata	14.210
	SRR5643515	five period of Gastrodia elata	15.450
	SRR5643524	five period of Gastrodia elata	16.640
	SRR5643525	five period of Gastrodia elata	22.170
	SRR5643528	five period of Gastrodia elata	21.470
	SRR5643658	five period of Gastrodia elata	24.800
	SRR5643659	five period of Gastrodia elata	18.790
	SRR5643660	five period of Gastrodia elata	21.310
	SRR5643661	five period of Gastrodia elata	17.140
	SRR5643662	five period of Gastrodia elata	19.480
	SRR5643663	five period of Gastrodia elata	20.980
	SRR5643664	five period of Gastrodia elata	20.170
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	21.980
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	13.500
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	18.280
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	26.310
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	26.650
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	29.650
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	24.530
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	26.360
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	17.640
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	19.360
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.550
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.550
SRP279888	Gastro	Gastrodia elata tuber	25.92
	Juven	Juvenile tuber	31.81
	Mother_Gastro	Mother tuber of Gastrodia elata	21.39
	Mother_Juven	Mother tuber of Juvenile	28.17