Detail information of GWHGAAEX002919/evm.TU.scaffold_128.5


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|113474158|ref|YP_720219.1|2.00E-1050S ribosomal protein L10 [Trichodesmium erythraeum IMS101]
nrgi|695058057|ref|XP_009417328.1|7.76E-73PREDICTED: 50S ribosomal protein L10, chloroplastic-like [Musa acuminata subsp. malaccensis]
Swissprottr|O80362|RK10_TOBAC8.00E-5250S ribosomal protein L10, chloroplastic (Precursor)
trEMBLtr|M0SBL7|M0SBL7_MUSAM1.00E-70Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P03990_001}
TAIRAT5G135109.00E-49Ribosomal protein L10 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000130345935347426+
Transcript Sequence

Network for GWHGAAEX002919

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00466.19Ribosomal_L10351191.30E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02864RP-L10, MRPL10, rplJ Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0042254Biological Processribosome biogenesis

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms11.830
SRR2545915Juvenile tuber16.970
SRP108465SRR5643513five period of Gastrodia elata25.280
SRR5643514five period of Gastrodia elata26.620
SRR5643515five period of Gastrodia elata33.690
SRR5643524five period of Gastrodia elata28.950
SRR5643525five period of Gastrodia elata20.200
SRR5643528five period of Gastrodia elata21.660
SRR5643658five period of Gastrodia elata19.460
SRR5643659five period of Gastrodia elata43.000
SRR5643660five period of Gastrodia elata45.930
SRR5643661five period of Gastrodia elata46.530
SRR5643662five period of Gastrodia elata45.660
SRR5643663five period of Gastrodia elata48.130
SRR5643664five period of Gastrodia elata41.560
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_125.320
SRR6049655Rhizomagastrodiae_C368-T10_good_143.420
SRR6049656Rhizomagastrodiae_C368-T07_good_132.740
SRR6049657Rhizomagastrodiae_C368-T07_good_126.630
SRR6049658Rhizomagastrodiae_C368-T04_good_127.330
SRR6049659Rhizomagastrodiae_C368-T04_good_119.240
SRR6049660Rhizomagastrodiae_C368-T01_good_127.590
SRR6049661Rhizomagastrodiae_C368-T04_good_125.800
SRR6049662Rhizomagastrodiae_C368-T01_good_137.410
SRR6049663Rhizomagastrodiae_C368-T01_good_132.470
SRR6049664Rhizomagastrodiae_C368-T10_good_137.790
SRR6049665Rhizomagastrodiae_C368-T10_good_137.790
SRP279888GastroGastrodia elata tuber 49.15
JuvenJuvenile tuber36.54
Mother_GastroMother tuber of Gastrodia elata 16.03
Mother_JuvenMother tuber of Juvenile 22.63