Gene detail

Detail information of GWHGAAEX002921/evm.TU.scaffold_128.12

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672171065\|ref\|XP_008805608.1\|	0	PREDICTED: glucan endo-1,3-beta-glucosidase 10-like [Phoenix dactylifera]
Swissprot	tr\|Q9ZU91\|E133_ARATH	2.00E-121	Glucan endo-1,3-beta-glucosidase 3 (Precursor)
trEMBL	tr\|J9Z401\|J9Z401_ELAGV	0	Glucan endo-1,3-beta-glucosidase {ECO:0000313\|EMBL:AFS50099.1}
TAIR	AT2G05790	0	O-Glycosyl hydrolases family 17 protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000130	713540	716375	-

Transcript Sequence
>GWHTAAEX002921 AAAAAAGAAGATTATATTTCTATATATTTTTGAGGAGTTACCACGATTTCATATGCGAAGGATTCAGTTCGGTCAATAAGATCGTGGGCGGACCGGACCGGACCGCACTACCCTATCAGAGCGTCAGCTTTATTAAAGCCGGTCGCTCGACCGCTTCTCTCCCCCCTCCAGTTCTCCCTCCGCCGGCTGCACTGCTGCCAGTGAGAGAGAACTGACATCATTAGAGAAAGCCAGATCTCTTCTTCGCTGGAGACGATGAAGCCTCTGGCGCTCTACTCTCTTCTTCTCCTTTTCCCCGCCGCCTTCTTCCTCGCCGCAGAGGCAGGTTCTATCGGAGTTAACTACGGCAGAGTGGCAAACAACCTCCCTCCGGCGACCAAAGTGGTGGAGCTCTTGAAATCTCAGGGCATAACTCAAGTGAAGTTGTACGACGCGGAGCCATCCGTACTCCGAGCCCTCGCTGGCACTGGAATCCAAGCGGTGATCGCACTCCCCAACGAACAGCTGGCTGCTGCCGCCACTCGCCCCTCCTTCGCCCTCTCATGGATCCAGCTCCACGTGGCTTCCTTCCACCCGTCCACCCTCATTCGCGCCATCGCCGTCGGCAATGAGGTCTTCGTCGACCCTCGCAACCTCACCGGCTACCTGATTCCGGCCATGCGCAATCTCCACTCGGCCCTCTCCCGTCTCCGCCTCGACGGAGCCATAAAGCTCTCCTCCCCAATCGCCCTCACCGCCCTCCAATCATCCTTCCCTTCCTCCGCCGGATCCTTCCGCCCAGACCTCTCCCAATCCGTCATCCGCCCCATGCTCCAAATCCTCCGCCAAACCAATTCCTTCCTGATGGTCAATGCGTACCCCTTCTTCGCCTACGAATCAAACTCCGGCGTCATCTCGCTAGACTACGCCCTCTTCCGCCCCAACCCCGGGGTCGTCGACGCCGGAAACGGCCTGAAGTACTTCAGCCTTCTGGACGCCCAGATCGACGCCGTCTATTCAGCCATGTCGGAGCTCGGGTTCCAAGACGTGCAGATCGTCGTCTCCGAGACGGGATGGCCTTCCAAAGGCGATTCCGTCGAGACCGGCGCGAGCGCTGCCAATGCCGCAGCCTACAACGGGAACCTCGTCCGCCGGGTTCTCACCGGAAATACCGGAACGCCGCTGCGCCCCAAAGCCGACATTGACGTCTACCTCTTTGCTCTGTTCAACGAGAATCAGAAGCCAGGGGCGGCGTCGGAGAGGAACTACGGATTGTTTTACCCGAATGAGGGGAAGGTGTATGAGATCGAGTTCTCTCTGAAAGGGGGGTTGAGATGGGAGGAAGAGAGGGGGAGGAATGGAGGAGGGACGGGCGAGGAATGGTGCGTTGCGAATTCGGCGGTGGGAAAGCAGAGGCTGCAGGCGGCTCTCGATTATGCTTGCGGGGACGGAGGAGCTGATTGCAGGCAGATACAGCCGGGGGCGCCGTGCTACGATCCTAACACCCTTGAGGCCCACTCCTCTTTTGCGTTTAATAGCTATTATCAGAAGAAGGGAAGGGCTGCTGGATCCTGCGACTTCGCCGGAGCGGCCTACGTTGTCTCCCAACGCCCAAAGGTAGGGAAATGCTCGCTGCCTGCTGGTGCTTAGGGAGGATCGCCGGCAGTCGGAAACTGAACACAAGGGTTCACCAGCTTTGGATCTCCACTAATCTAAAACCCATTTTCGCTTATTTTAGCAAAGAAAGAGCCCAGCAGTGTCTCAAGTGGGTTGCTTCTCCTCCTTCGCTCTCTTTTTTATATTATTAATTTTGTACCTCTGATTCGCTGAATCTAGTCGGTCCCCACTTCCAATTTGTATGCAATTGCTTTCGTGATGCAGTTTTGTTTTTTGCAAATTTATGGAGGAAAGAACTTGAGAGACTGCACTACTCACTGTTGGGGGTTTTCCTGCTTGAGAAATATAATTGCTACATTGTTTTGTTAAATAAAAAAAGTATTTTAGACTAAGGAATATATATATATACAGCAGCAGGCAAGTTAATTTTTTTTTTGAGAGCTTCACTCTTTTGTTAAATATTCAGTATTCTCTTGATCGGCGCAAAAGGCTAAGATAGTGGACGAAGGAAGCCCTATCTATGTTGGTGTTGAATGGAAACAAATGTTACAGGGTGGATTTGTCTTTCTAGCTAACTGTGTTAGTGGAGTTTCTGGGCAGGGCATGTGGCTACCTTTTTTAACAACTTTTTGAAATAATAAAATTCTAAATAAATTTTATTGATCCTTCTAAATAAATTTCGATGCTTTTTTTTTTTTTT

Network for GWHGAAEX002921

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00332.17	Glyco_hydro_17	26	346	3.30E-95
PF07983.12	X8	369	439	1.70E-22

Protein Sequence

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH17

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.750
SRP064423	SRR2545915	Juvenile tuber	23.760
SRP108465	SRR5643513	five period of Gastrodia elata	68.240
	SRR5643514	five period of Gastrodia elata	131.620
	SRR5643515	five period of Gastrodia elata	88.260
	SRR5643524	five period of Gastrodia elata	88.880
	SRR5643525	five period of Gastrodia elata	1.000
	SRR5643528	five period of Gastrodia elata	0.340
	SRR5643658	five period of Gastrodia elata	1.490
	SRR5643659	five period of Gastrodia elata	25.170
	SRR5643660	five period of Gastrodia elata	14.910
	SRR5643661	five period of Gastrodia elata	16.400
	SRR5643662	five period of Gastrodia elata	8.550
	SRR5643663	five period of Gastrodia elata	10.290
	SRR5643664	five period of Gastrodia elata	9.690
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	92.800
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	66.450
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	97.280
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	75.110
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	41.600
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	19.890
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	79.710
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	73.590
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	98.810
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	52.140
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	52.440
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	52.440
SRP279888	Gastro	Gastrodia elata tuber	2.46
	Juven	Juvenile tuber	6.58
	Mother_Gastro	Mother tuber of Gastrodia elata	0.26
	Mother_Juven	Mother tuber of Juvenile	0.75