Detail information of GWHGAAEX002923/evm.TU.scaffold_128.16
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1875 | 0 | Thyroid hormone receptor-associated coactivator complex component (TRAP170) |
| nr | gi|743882834|ref|XP_010909253.1| | 0 | PREDICTED: mediator of RNA polymerase II transcription subunit 14-like isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q9SR02|MED14_ARATH | 0 | Mediator of RNA polymerase II transcription subunit 14 |
| trEMBL | tr|F6HTQ6|F6HTQ6_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB58067.1} |
| TAIR | AT3G04740 | 0 | RNA polymerase II transcription mediators |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000130 | 825776 | 842519 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002923
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08638.10 | Med14 | 9 | 199 | 6.40E-53 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K15156 | MED14, RGR1 | Thyroid hormone signaling pathway | map04919 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter |
| GO:0003712 | Molecular Function | transcription cofactor activity |
| GO:0016592 | Cellular Component | mediator complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 22.260 |
| SRR2545915 | Juvenile tuber | 19.150 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.580 |
| SRR5643514 | five period of Gastrodia elata | 11.580 | |
| SRR5643515 | five period of Gastrodia elata | 10.520 | |
| SRR5643524 | five period of Gastrodia elata | 10.810 | |
| SRR5643525 | five period of Gastrodia elata | 14.080 | |
| SRR5643528 | five period of Gastrodia elata | 11.160 | |
| SRR5643658 | five period of Gastrodia elata | 12.050 | |
| SRR5643659 | five period of Gastrodia elata | 12.150 | |
| SRR5643660 | five period of Gastrodia elata | 13.910 | |
| SRR5643661 | five period of Gastrodia elata | 12.020 | |
| SRR5643662 | five period of Gastrodia elata | 12.540 | |
| SRR5643663 | five period of Gastrodia elata | 12.020 | |
| SRR5643664 | five period of Gastrodia elata | 12.150 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 15.340 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.460 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 14.340 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 16.070 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 21.330 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 25.050 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 19.190 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 21.830 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 13.230 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 15.890 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 12.260 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 12.260 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 16.54 |
| Juven | Juvenile tuber | 17.86 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 16.61 | |
| Mother_Juven | Mother tuber of Juvenile | 22.88 |