Detail information of GWHGAAEX002936/evm.TU.scaffold_128.37
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|20807685|ref|NP_622856.1| | 3.00E-25 | thiol-disulfide isomerase [Thermoanaerobacter tengcongensis MB4] |
| KOG | KOG0191 | 0 | Thioredoxin/protein disulfide isomerase |
| nr | gi|672171055|ref|XP_008805603.1| | 0 | PREDICTED: protein disulfide isomerase-like 2-3 [Phoenix dactylifera] |
| Swissprot | tr|Q67UF5|PDI23_ORYSJ | 0 | Protein disulfide isomerase-like 2-3 (Precursor) |
| trEMBL | tr|A0A0A0KC07|A0A0A0KC07_CUCSA | 0 | Uncharacterized protein {ECO:0000313|EMBL:KGN47008.1} |
| TAIR | AT1G04980 | 0 | PDI-like 2-2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000130 | 1498943 | 1517238 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002936
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00085.19 | Thioredoxin | 29 | 127 | 1.10E-28 |
| PF00085.19 | Thioredoxin | 159 | 257 | 7.10E-29 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K09584 | PDIA6, TXNDC7 | Protein processing in endoplasmic reticulum | map04141 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0045454 | Biological Process | cell redox homeostasis |
| GO:0016853 | Molecular Function | isomerase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 25.290 |
| SRR2545915 | Juvenile tuber | 32.610 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 93.860 |
| SRR5643514 | five period of Gastrodia elata | 116.290 | |
| SRR5643515 | five period of Gastrodia elata | 92.900 | |
| SRR5643524 | five period of Gastrodia elata | 135.220 | |
| SRR5643525 | five period of Gastrodia elata | 76.640 | |
| SRR5643528 | five period of Gastrodia elata | 103.600 | |
| SRR5643658 | five period of Gastrodia elata | 102.070 | |
| SRR5643659 | five period of Gastrodia elata | 65.290 | |
| SRR5643660 | five period of Gastrodia elata | 61.160 | |
| SRR5643661 | five period of Gastrodia elata | 73.240 | |
| SRR5643662 | five period of Gastrodia elata | 51.400 | |
| SRR5643663 | five period of Gastrodia elata | 58.740 | |
| SRR5643664 | five period of Gastrodia elata | 44.500 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 73.630 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 100.770 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 94.920 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 57.720 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 50.450 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 49.590 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 55.200 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 63.020 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 113.370 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 91.190 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 154.490 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 154.490 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 57.69 |
| Juven | Juvenile tuber | 57.78 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 79.04 | |
| Mother_Juven | Mother tuber of Juvenile | 56.43 |