Detail information of GWHGAAEX002938/evm.TU.scaffold_128.39
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|383756862|ref|YP_005435847.1| | 2.00E-21 | 2OG-Fe(II) oxygenase family oxidoreductase [Rubrivivax gelatinosus IL144] |
| KOG | KOG0143 | 2.00E-79 | Iron/ascorbate family oxidoreductases |
| nr | gi|672164070|ref|XP_008801900.1| | 2.38E-110 | PREDICTED: protein SRG1-like [Phoenix dactylifera] |
| Swissprot | tr|Q39224|SRG1_ARATH | 6.00E-48 | Protein SRG1 |
| trEMBL | tr|W5I6H6|W5I6H6_WHEAT | 5.00E-96 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Traes_7DS_3BD0BF4B6.2} |
| TAIR | AT5G54000 | 2.00E-79 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000130 | 1522159 | 1557967 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002938
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF14226.5 | DIOX_N | 2 | 76 | 3.10E-09 |
| PF03171.19 | 2OG-FeII_Oxy | 129 | 220 | 1.20E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 41.720 |
| SRR2545915 | Juvenile tuber | 45.140 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 24.190 |
| SRR5643514 | five period of Gastrodia elata | 26.010 | |
| SRR5643515 | five period of Gastrodia elata | 23.460 | |
| SRR5643524 | five period of Gastrodia elata | 29.360 | |
| SRR5643525 | five period of Gastrodia elata | 29.710 | |
| SRR5643528 | five period of Gastrodia elata | 35.440 | |
| SRR5643658 | five period of Gastrodia elata | 35.680 | |
| SRR5643659 | five period of Gastrodia elata | 24.630 | |
| SRR5643660 | five period of Gastrodia elata | 26.560 | |
| SRR5643661 | five period of Gastrodia elata | 24.600 | |
| SRR5643662 | five period of Gastrodia elata | 23.120 | |
| SRR5643663 | five period of Gastrodia elata | 26.080 | |
| SRR5643664 | five period of Gastrodia elata | 22.130 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 28.480 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 21.130 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 28.190 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 30.810 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 32.750 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 35.950 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 28.180 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 29.460 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 23.300 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 28.680 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 25.910 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 25.910 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 27.56 |
| Juven | Juvenile tuber | 39.72 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 33.84 | |
| Mother_Juven | Mother tuber of Juvenile | 35.66 |