Gene detail

Detail information of GWHGAAEX002943/evm.TU.scaffold_128.45

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|343085920\|ref\|YP_004775215.1\|	8.00E-15	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
nr	gi\|590663245\|ref\|XP_007036158.1\|	3.17E-174	Leucine-rich repeat protein kinase family protein [Theobroma cacao]
Swissprot	tr\|O48788\|Y2267_ARATH	2.00E-102	Probable inactive receptor kinase At2g26730 (Precursor)
trEMBL	tr\|A0A061G0X7\|A0A061G0X7_THECC	1.00E-174	Leucine-rich repeat protein kinase family protein {ECO:0000313\|EMBL:EOY20659.1}
TAIR	AT2G26730	8.00E-102	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000130	2079337	2084916	+

Transcript Sequence
>GWHTAAEX002943 ATGTCAGGGACTGCAAGGACCGAACCTAGGGCTAGCCCTCCTGATCGAACCCAAGGGTTCCACATCGTGGCCTGTCGTTCTCTTCGGTATGTTAGACATTTGTCAGCTTCCCTTTCCACTGAATTCTCGATTTCTCCTCTCCCATCTTTAGATAGTTCTCTACTTCCAAAGCTTGGAATACCTCCTCCTCCTCCTCTAATGGAGGCAAGCTCAGCGCGGCTCCTCCTCCTCTGTCTCTTCTTCTTGTTTCTAGTCAACTCCGCGAGCTCAGACAACTCCGACGACTTCAAAAGCCTCTTGGTATCCTTCCTCAAAAAGCTATCTCCAAGCAATCCTCTAATTGATAGAGACCTCAACTGGACCGCCGCAGCTGACCCCTGCAATTGGATAGGCATAGAGTGCAATGCACGCATTCAATCCGTCCGTTCCATAGCTCTAGAATCCCTCGATCTCACTGGCTTCATCGACGGAGTTCTTCTGTCCCACATCTGCGACTCCAGCTCTCTTGCCGTGCTGAGCCTCAAAAGCAACTCTATTGGCGGCCTCCTTCCTTCCGAAATCGTCGGCTGCTCCCAACTGACACACATCTACCTCAGCAACAACAGCCTCACAGGAAGCCTTCCCTCATCCCTTCCTGGCCTCGGAAACCTGAAGAGGCTTGATATCTCTCACAACAATTTTTCCGGGGAAATCCCAAACAACATGTCGAAAATTTCGGGCCTTCTGTCCTTCCTTGCGAACAACAATCGTTTCACCGGAGCCATACCTGAATTCGACCTTAAGAACTTCTATGAGTTCGACGTTTCTTCTAACCAGTTGTCCGGCTCGCTTCCTCTGCATTCTGAAAAATTCGGCGCGTCCAACTTCGCTGGAAATTCTGGGCTGTGTGGAAAACCACTAGAATTGGAATGCCCTCCTCCTCCTCCTCCTCCTCCAACAACAACAGCAACATCTGCTAAATCTAAAAAGTCTTCAGGAAACAAATTTGTTATGGTTTTTGGGTACGTTCTGTTTGCTCTGGTTCTGGCGCTCTTTTTGGGATACGGATTTATGAAAAAGAGAAAGGCGGAGGGGAAGAAGAGGAGGAAAAGCGGGCCGCATCAAAAAGGAGGACAATTGAGTGAGAAGAAGGCTTCAAAGAGCCCCTCGCGATCTGAATACTCTATCAATTCTTCAGCTCAAAGCTCGGAGAGGCTGTTGACGTCTCTGGTGGTGCTTAGAAAGAATGAGTACAGCAATAATGAGCTGAAGTTCGAAGAGCTTCTGAGGGCGCCTGCTGAGCTTCTCGGAAAAGGGAGGTTTGGAAGTCTGTACAAGGTGGTGATTGGGAGCGGGGAAGAGCTGGCGGTGAAGAGGATCAAAGACTGGACAATGTCAGGCGAGGATTTTCAGAAGAAGATGATGAGGATGGATAAGGCAACACATCCCAATGTTCTTCCTGCCACGGCTTTCTATTGCTCCAAGCAGGAGAAGCTTGTGGTTTATGAGTTTCAGAAGAATGGAAGCCTTCACAGTCTCCTCCATGATAACACGGAAGGGCGGGCGTTCACATGGGTGAGCCGGCTGAACGTGGCGCTGGGCATATCGGCGGGGATTTCCCACATGCACGAACACCTAAGCCTGGGACGCACGTCGGGCCCCGCCATGGCTGCCGGGCACGGCAACCTGAAATCATCCAACATTCTCTTGTCCCCCTCAATGGAACCCCTCATCAGCGAGTACGGCCTCACCGCTCTCGCCACCCACCGCCACGACCAGAAACCCGACTCCAGCCCCCCAGCGGAGCCCTACTCCCCCAGCACAGACGTGTACGACTTTGGGATCATTCTGCTGGAGCTGCTGACGGGGAAGCCCAGCCACGGGTTCAATCTGGGGCAGTGGGTGCATTCTGTGGTGCGGGAGGAGTGGACGGTGGAGGTCTTCGATAGGTCTCTGGTCGGGGATGGGGACATGGGCGATGAGGCCATGATGAGGTTGCTCCAGGTGGCGCTCAAGTGCATGTCCAATGACCGTCCCACCATGGCTGAGGTTGCATCCACCATTACCAGATTGACGGATGCAGATCAGTGATCTATTCAACTGTCTATTGAATGCCTCTGCTTGTAGTTGCAGTGTATGTACACTTTCATTTTTTTTAGCCTTCGTTTTATGTCAGGAAATAATGTGCGGTC

Network for GWHGAAEX002943

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.5	LRR_8	168	227	2.30E-09
PF07714.16	Pkinase_Tyr	427	679	5.00E-19

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005515	Molecular Function	protein binding
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.250
SRP064423	SRR2545915	Juvenile tuber	0.980
SRP108465	SRR5643513	five period of Gastrodia elata	19.080
	SRR5643514	five period of Gastrodia elata	10.160
	SRR5643515	five period of Gastrodia elata	8.380
	SRR5643524	five period of Gastrodia elata	7.730
	SRR5643525	five period of Gastrodia elata	0.170
	SRR5643528	five period of Gastrodia elata	0.220
	SRR5643658	five period of Gastrodia elata	0.080
	SRR5643659	five period of Gastrodia elata	0.260
	SRR5643660	five period of Gastrodia elata	4.060
	SRR5643661	five period of Gastrodia elata	0.980
	SRR5643662	five period of Gastrodia elata	0.290
	SRR5643663	five period of Gastrodia elata	0.390
	SRR5643664	five period of Gastrodia elata	0.270
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	23.030
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	42.610
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	35.720
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	10.380
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	15.280
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	12.040
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.950
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.480
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	22.480
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	15.670
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	53.640
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	53.640
SRP279888	Gastro	Gastrodia elata tuber	0.29
	Juven	Juvenile tuber	0.02
	Mother_Gastro	Mother tuber of Gastrodia elata	0.32
	Mother_Juven	Mother tuber of Juvenile	0.28