Detail information of GWHGAAEX002947/evm.TU.scaffold_128.49


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|328949667|ref|YP_004367002.1|1.00E-110DEAD/DEAH box helicase domain protein [Marinithermus hydrothermalis DSM 14884]
KOGKOG03311.00E-155ATP-dependent RNA helicase
nrgi|720091400|ref|XP_010245402.1|0PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Nelumbo nucifera]
Swissprottr|Q0DM51|RH3_ORYSJ0DEAD-box ATP-dependent RNA helicase 3, chloroplastic (Precursor)
trEMBLtr|M0RS43|M0RS43_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P14130_001}
TAIRAT3G223301.00E-155putative mitochondrial RNA helicase 2

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000013024740902505526+
Transcript Sequence

Network for GWHGAAEX002947

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module8

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00270.28DEAD1403113.50E-46
PF00271.30Helicase_C3524572.20E-30
PF08152.11GUCT5446442.00E-20
PF00098.22zf-CCHC7457622.80E-05
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270Molecular Functionzinc ion binding
GO:0005524Molecular FunctionATP binding
GO:0004386Molecular Functionhelicase activity
GO:0003676Molecular Functionnucleic acid binding
GO:0003723Molecular FunctionRNA binding
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms77.010
SRR2545915Juvenile tuber58.600
SRP108465SRR5643513five period of Gastrodia elata21.920
SRR5643514five period of Gastrodia elata25.960
SRR5643515five period of Gastrodia elata20.300
SRR5643524five period of Gastrodia elata23.650
SRR5643525five period of Gastrodia elata11.900
SRR5643528five period of Gastrodia elata8.870
SRR5643658five period of Gastrodia elata10.850
SRR5643659five period of Gastrodia elata24.150
SRR5643660five period of Gastrodia elata27.800
SRR5643661five period of Gastrodia elata27.110
SRR5643662five period of Gastrodia elata24.600
SRR5643663five period of Gastrodia elata20.680
SRR5643664five period of Gastrodia elata26.940
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_129.370
SRR6049655Rhizomagastrodiae_C368-T10_good_124.870
SRR6049656Rhizomagastrodiae_C368-T07_good_130.380
SRR6049657Rhizomagastrodiae_C368-T07_good_128.870
SRR6049658Rhizomagastrodiae_C368-T04_good_123.040
SRR6049659Rhizomagastrodiae_C368-T04_good_123.180
SRR6049660Rhizomagastrodiae_C368-T01_good_135.260
SRR6049661Rhizomagastrodiae_C368-T04_good_129.350
SRR6049662Rhizomagastrodiae_C368-T01_good_138.850
SRR6049663Rhizomagastrodiae_C368-T01_good_134.430
SRR6049664Rhizomagastrodiae_C368-T10_good_129.920
SRR6049665Rhizomagastrodiae_C368-T10_good_129.920
SRP279888GastroGastrodia elata tuber 30.70
JuvenJuvenile tuber32.58
Mother_GastroMother tuber of Gastrodia elata 4.86
Mother_JuvenMother tuber of Juvenile 16.74