Detail information of GWHGAAEX002948/evm.TU.scaffold_128.50


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|158337810|ref|YP_001518986.1|6.00E-8150S ribosomal protein L3 [Acaryochloris marina MBIC11017]
KOGKOG31412.00E-116Mitochondrial/chloroplast ribosomal protein L3
nrgi|659120254|ref|XP_008460096.1|6.36E-134PREDICTED: 50S ribosomal protein L3, chloroplastic [Cucumis melo]
Swissprottr|Q9SKX4|RK3A_ARATH7.00E-11750S ribosomal protein L3-1, chloroplastic (Precursor)
trEMBLtr|A0A0A0K9U5|A0A0A0K9U5_CUCSA1.00E-133Uncharacterized protein {ECO:0000313|EMBL:KGN46258.1}
TAIRAT2G430302.00E-116Ribosomal protein L3 family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000013025067882513602+
Transcript Sequence

Network for GWHGAAEX002948

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00297.21Ribosomal_L31702552.10E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02906RP-L3, MRPL3, rplC Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms28.860
SRR2545915Juvenile tuber32.390
SRP108465SRR5643513five period of Gastrodia elata39.770
SRR5643514five period of Gastrodia elata41.530
SRR5643515five period of Gastrodia elata37.340
SRR5643524five period of Gastrodia elata42.170
SRR5643525five period of Gastrodia elata46.880
SRR5643528five period of Gastrodia elata41.260
SRR5643658five period of Gastrodia elata44.940
SRR5643659five period of Gastrodia elata54.830
SRR5643660five period of Gastrodia elata57.980
SRR5643661five period of Gastrodia elata53.900
SRR5643662five period of Gastrodia elata58.340
SRR5643663five period of Gastrodia elata64.590
SRR5643664five period of Gastrodia elata69.340
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_138.550
SRR6049655Rhizomagastrodiae_C368-T10_good_139.500
SRR6049656Rhizomagastrodiae_C368-T07_good_136.910
SRR6049657Rhizomagastrodiae_C368-T07_good_138.380
SRR6049658Rhizomagastrodiae_C368-T04_good_130.970
SRR6049659Rhizomagastrodiae_C368-T04_good_134.390
SRR6049660Rhizomagastrodiae_C368-T01_good_133.950
SRR6049661Rhizomagastrodiae_C368-T04_good_136.470
SRR6049662Rhizomagastrodiae_C368-T01_good_143.770
SRR6049663Rhizomagastrodiae_C368-T01_good_136.780
SRR6049664Rhizomagastrodiae_C368-T10_good_144.440
SRR6049665Rhizomagastrodiae_C368-T10_good_144.440
SRP279888GastroGastrodia elata tuber 71.48
JuvenJuvenile tuber46.91
Mother_GastroMother tuber of Gastrodia elata 26.40
Mother_JuvenMother tuber of Juvenile 21.45