Gene detail

Detail information of GWHGAAEX002954/evm.TU.scaffold_128.57

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|383455776\|ref\|YP_005369765.1\|	1.00E-49	putative ATP-dependent RNA helicase RhlE [Corallococcus coralloides DSM 2259]
KOG	KOG0331	0	ATP-dependent RNA helicase
nr	gi\|743769104\|ref\|XP_010914836.1\|	0	PREDICTED: DEAD-box ATP-dependent RNA helicase 50 isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q0DVX2\|RH50_ORYSJ	0	DEAD-box ATP-dependent RNA helicase 50
trEMBL	tr\|A0A068BG41\|A0A068BG41_COCNU	0	DEAD-box ATP-dependent RNA helicase {ECO:0000313\|EMBL:AIC82455.1}
trEMBL	tr\|A0A068BG41\|A0A068BG41_COCNU	4.00E-11	DEAD-box ATP-dependent RNA helicase {ECO:0000313\|EMBL:AIC82455.1}
TAIR	AT3G06980	0	DEA(D/H)-box RNA helicase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000130	2761427	2783620	+

Transcript Sequence
>GWHTAAEX002954 ATAATTTGAACCTGCAATCGCTCTTCAGCCTTTAGAAATAAAGAGAAAAAGATGCGCACTGAACTCTAGAGCAGGAGGCCATGCTCACAGCTAGCTCCTTAACGCCCTCGCCGACTTCTTCGGTACTTATTTCTAGTCATTTCCTCCCCTGCAAAATCTCCGTTCAGGCAGCGATGGCATCGCCGATGATTCCATCAGCCGATGTGAAGGCCATGATGAGGGGAGACAAAAGAAACGCATTCCACAAACGTGATGGGAATAAATGCTTTGTGGAGCCACTTAGAACCTGCTTTTTACAGAATTTTCATTTCAGTGCCCTATCAAATTTTTCTAATGCCCCTCAAGTTCCCGGCAGTGACCTACACCACTGTTGGAGGTGGCATAAGCTTTCTGTGCTGCAGGCATATCAGCGGATCCCTATGGACACACCTGGGGCCTATCGCCTCATTGATGATGAAACTGGTGAGAATGTTATTGTTTGGGGTGGCACAGAAAGTGACTCCCCCATCCCTTCCAAAGAGGCCATCTCATGGAAATCTGTGGACAACCCTGAACAAGGAGGACGGAAGATTATGCCAAGCTCTGCAGACTCTGCCGAGTCATGTTTAAATTTGGTTAGAGAAGAGGAAAGCATAGACATGCCTTCTGATGGAGAAATGAAGGGCATTTCAGTACCAAACGCTGTCAACAATGCACAGACATCTTCTCGACGATGGAAGCCGGATAGTGGTTCCATGCAAAGCATTGATACTGCCAGGAAGAAATATCATAAGAAGTTGCGCTATGATAGTGGATTCTTTAGTAGGAAGAACTTCAGAGATTTAGGTTGTAGTGATTATATGATTGAATCTCTCAGAAAACAATCTTTCATTTATCCTTCAAATATTCAGGCCATGGCTTTTAGGCCCATTTTAGAAGGTAAAAGTTGCATCATTGCTGATCAAAGTGGATCTGGGAAGACATTGGCATACATTGCTCCTGTGGTACAACGCCTAAGAGAAGAAGAACTATCAGGGCTAGAAGGTAGGAGCCTACGAGTTGTGATATTGTCGCCAACGTCTGAATTAGCTTCCCAGGTGCTTCAAAATTGTCGTTCAATGGCAAAGTCGGGTGTTCCATTCAGATCTGCAGTTGCAACTGGAGGGTTTCGACAAAAAACTCAATTAGAAGCCTTGCAACAAAACCTGGATGTCCTTATAGCTACACCTGGCCGTTTTATGTTTTTATTGCAAGAAGGCTACATTCAGCTAAATAATCTGAAATGCGTTATTCTAGATGAAGTTGACATCCTGTTAGGGGATGAAGATTTTGAGCCAGTGCTCCAAAGCTTCATCAGATTGGCACCGATGACAGTGCAGTATCTCTTTGTCACTGCAACGCTTCCTGTGGATATCTACAACAAATTAATTGAAGACTTTCCCGATACTGAAGTAGTGATGGGACCCGGAATGCATCGCACAAGCTCTAGACTAAATGAGGTTGTTTTGGACTGCAGTGGAAAAGAGGGAGAAGAAAAGAATTCAGACACAGCTTTCCTAAACAAGAAAACTGCTCTGTTGCACCTTGTGGAAGAATCTCCTGTTCCAAGAACTATTGTTTTCTGCAACAAAATGGAAACGTGCAGGAAGGTTGAGAATGCATTGAAGCGCTTTGATAGAAAAGGGATTCAGTTGAAGGTTTTGCCCTTTCATGCTGCCCTGACTCAGGAGCTGAGGCTGTCAAACATGAAGGAGTTCCTCAAATCTGAATCAAAGCAGTTAATGTTTCTCATCTGCACTGACAGGGCATCTCGGGGCATTGACTTTGCAAATGTGGATCATGTGCTGCTGTTTGACTTTCCTCGTGACCCGAGCGAGTACGTCCGGCGAGTCGGGAGGACGGCCCGCGGCGCCCACGGAAAAGGCAAGGCCTTTGTGTTCGCCGTAGGCAAGCAGGTTTCCATGGCCAGGAGGATCATTCAAAGGAACATTAAGCGCCATCCTCTGCACCCTGTGCCAGATGCCTACGAATTGCACAAGCAATTTTGCTGAAAGAAGTCTGAGCCTCAATGAGCGAATATGTTGAGTTTAGATCACCAAGTTACAACATCATTATATTTTTGCTAATAATTGATTTATTATTATTTTTTTAAATTATAATAATCAGATAGGATAGGGTCTTAAGGATGGCTTAGATTTTGCAAGTTAAGCTAATGTTAAAATAGTTTTACTGTTAAATTAGCATGAGTGAGTTTAAGATAATTTAATTTGTTATGATGAAAATTGTTTGGG

Network for GWHGAAEX002954

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.28	DEAD	268	438	7.10E-35
PF00271.30	Helicase_C	489	603	2.20E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	4.840
SRP064423	SRR2545915	Juvenile tuber	5.670
SRP108465	SRR5643513	five period of Gastrodia elata	5.510
	SRR5643514	five period of Gastrodia elata	6.040
	SRR5643515	five period of Gastrodia elata	4.180
	SRR5643524	five period of Gastrodia elata	4.750
	SRR5643525	five period of Gastrodia elata	3.890
	SRR5643528	five period of Gastrodia elata	3.520
	SRR5643658	five period of Gastrodia elata	2.650
	SRR5643659	five period of Gastrodia elata	7.310
	SRR5643660	five period of Gastrodia elata	8.650
	SRR5643661	five period of Gastrodia elata	8.850
	SRR5643662	five period of Gastrodia elata	9.080
	SRR5643663	five period of Gastrodia elata	9.140
	SRR5643664	five period of Gastrodia elata	10.740
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.580
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	5.430
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.640
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	6.540
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	4.720
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.800
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	5.210
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.320
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.300
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.950
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.630
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.630
SRP279888	Gastro	Gastrodia elata tuber	9.19
	Juven	Juvenile tuber	7.67
	Mother_Gastro	Mother tuber of Gastrodia elata	2.95
	Mother_Juven	Mother tuber of Juvenile	4.47