Gene detail

Detail information of GWHGAAEX002961/evm.TU.scaffold_129.7

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|74316765\|ref\|YP_314505.1\|	3.00E-56	hypothetical protein Tbd_0747 [Thiobacillus denitrificans ATCC 25259]
KOG	KOG3084	3.00E-88	NADH pyrophosphatase I of the Nudix family of hydrolases
nr	gi\|743833732\|ref\|XP_010935337.1\|	2.02E-116	PREDICTED: nudix hydrolase 23, chloroplastic-like [Elaeis guineensis]
Swissprot	tr\|P93740\|NUD23_ARATH	2.00E-106	Nudix hydrolase 23, chloroplastic (Precursor)
trEMBL	tr\|A0A067JXA4\|A0A067JXA4_JATCU	2.00E-106	Uncharacterized protein {ECO:0000313\|EMBL:KDP24630.1}
TAIR	AT2G42070	3.00E-88	nudix hydrolase homolog 23

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000132	176735	206817	-

Transcript Sequence
>GWHTAAEX002961 ATGAGTTATGCGTTCTACATAATTTGCTACATATTCGCCGCGGCGATCAGTTGCTCAACTAAACAACCATAGTGAAAAAAATCTGCGACAATGATGCTGAGACCTCTCAACTTTCTTCTCTTAGGGTTTAGTGCATCGCCGTTTCGGCGATGGAGCCCTCGTAGCATTATCTCGTTTCTTAAGGCTGTTCCTAGTTTGGATTTGAGCATTAGCTCATCTTCCCAATCTCGGCCGTTTTCCTCGTTCCTGCTCCCTCGGCGCACTTTTCACGTTAAGGCTTTACAAGTATCTATCGGTGATTCGGAATCGTGTCCAGTCAGCGATGCAGCTGCTTCGCCATCGGCAGTTTCTTTAACGGCGAACTCCGCACATAAGCAAAAGTATAAATTTTGCCAGTTTTGTGGTAACCCAACTAAGCAAGCGATACCTGAGGGAGATGAGAAGATGAGAGCAGTTTGCACAGTCTGCGGAACAATCCACTATGAAAACCCAAAGATGGTTGTTGGTTGTCTTGTGGAGCATGATGGAAAAGTTTTGCTTTGTAAACGGAATATTCAGCCATCTTATGGCCTTTGGACCCTTCCTGCCGGTTACTTGGAAGTTGGGGAGTCAGCTGCTGAAGGGGCAATGAGGGAAACCTTTGAAGAAGCAAATGCTGAAGTAGAAATAACTTCACCCTTTGCTCAGTTGGATATTCCCCACATTGGACAAAGCTATATCATATTCCGAGCAAAAATGAAGAAGCCTTATTTTTCTCCCGGCGCAGAGTCAATGGAATGCATGCTATTCCCACTGGATGACATACCTTTTACGTGCCTTGCATTTGCATCAATATATGCTGCATTAAAAATGTATGTTGAAGATATCAAGAATGAAAAGCTAAGGTTTCACTACTGTACCATAAACAAGAGGCCCGGGGCATACTTGTCTGATCCCAATGGTTTTGACATGGAGCATCACCTGTGTTCTTGAATTTTAGGGATGGGATATTTCTGCGCTTCTATTTCAACGATTCCTAATAATGCAGCCTGGCATTACAAGTGTTGGTGATGGCATGTGACTCTTAATTGTGGTGTTTAGAGGTTGCTGGGAGGCTACTATTTTAGAGGAAAAGGTTCTCAACATCACAAAGGGAATTAAGCAAGAATCGTCGTACACAGCTCAAATAAAGCATGCTCATCTCCTCCTCCATCTCCATCATGGGAATATGCCATCATATATTTGCCATTATAAAAAATGAAGAGTTATTCACGTGATAAAATTACAAATATAAGTAATTAGCTAAAAAATAATTAATTTGATAAAGCAGGTAATCAAATCAGGTTAGTAATGGAGCTTGACAAATATGAGCCAGCTCAAACGTATAGGCAAGAGAAGCAACTCAGCTAAGATCTTAGTTAATTTCAACTTGGCAATAGTTTGAGCTGAACTTTTGGTGAACAGCTTCTACATTTTGATTTTTTATGAACACTATAGTACTCGGTTAAGTGCTTATCATAAATAAAATAATTAAATTTAGTGTTAAATTGATGATAATTGAGATTTAGTATTATAATTATATTAACCTATTTAATTATCTAGAAAATGTTGGGTCTGTAGCATTTTTAATTTTTTTTTATTTAGGATTAGCCATCTAAAACTCTAGATGGAGGTGCACTAGTGCTAGCTTTAATTAGGAATTGAACCATCTAAATATGTTTATGTTTTGATTTCTCTCTCTTACTCAACCGGATTATGAATGTCTT

Network for GWHGAAEX002961

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14803.5	Nudix_N_2	99	132	1.60E-16
PF00293.27	NUDIX	138	238	2.10E-11

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18453	NUDT23	Metabolic pathways	map01100
		Purine metabolism	map00230
		Riboflavin metabolism	map00740

Gene Ontology

GO term	Ontology	Name
GO:0016787	Molecular Function	hydrolase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	6.200
SRP064423	SRR2545915	Juvenile tuber	6.920
SRP108465	SRR5643513	five period of Gastrodia elata	6.810
	SRR5643514	five period of Gastrodia elata	6.420
	SRR5643515	five period of Gastrodia elata	7.250
	SRR5643524	five period of Gastrodia elata	6.530
	SRR5643525	five period of Gastrodia elata	6.600
	SRR5643528	five period of Gastrodia elata	6.030
	SRR5643658	five period of Gastrodia elata	5.900
	SRR5643659	five period of Gastrodia elata	5.530
	SRR5643660	five period of Gastrodia elata	5.900
	SRR5643661	five period of Gastrodia elata	5.470
	SRR5643662	five period of Gastrodia elata	7.200
	SRR5643663	five period of Gastrodia elata	6.740
	SRR5643664	five period of Gastrodia elata	6.200
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.210
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.960
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	7.310
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.650
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.290
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.250
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.440
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.170
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.920
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	6.120
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	6.780
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	6.780
SRP279888	Gastro	Gastrodia elata tuber	8.52
	Juven	Juvenile tuber	5.10
	Mother_Gastro	Mother tuber of Gastrodia elata	5.04
	Mother_Juven	Mother tuber of Juvenile	4.46