Gene detail

Detail information of GWHGAAEX002963/evm.TU.scaffold_129.9

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG1300	Vesicle trafficking protein Sec1
nr	gi\|695044147\|ref\|XP_009409807.1\|	PREDICTED: SNARE-interacting protein KEULE-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9C5X3\|KEULE_ARATH	SNARE-interacting protein KEULE
trEMBL	tr\|M0TI39\|M0TI39_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P16520_001}
TAIR	AT1G12360	Sec1/munc18-like (SM) proteins superfamily

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000132	215246	277266	-

Transcript Sequence
>GWHTAAEX002963 ACCGGAAGCATAATCCTATCGTTAATGGGTGAAGGCCGGCGGAGCTTTTGTCCATTTCGTTCTAGTTCTGGTCAAGCCGTGACAATCGTTCCCATCTTTTCGACAAGGTCAACCATCTCCGAATGGCAACCCTTACACCATCACAGACGTATCGTGTTCTGGGGTGACCTTTTACTTCGATTTTCTCGAAATCTTCTGCCTCGAAGCACGATCCATCTCGTGTCTCTGGCCAGCGTGCGATTGCCGCTTTCTAGTCTCTAAAATGTCGATCTCTGATTCGGATTCTTCAACTGGAAGCGGTGAATACAAGAATTTCCGTCAGACAACTCGAGACCGTCTGTTACATGAAATGCTACGATCAACTCGTGCAAAGGATTCAAAAACTAGATGGAAGGTACTTATAATGGATAAAGTCACGGTGAAAATCATGTCATGTTCTTGCAAAATGGCTAATATCACTGAAGAAGGGATTTCATTGGTTGAAGACATTTATAAAAGAAGACAGCCAATGCCTTTAATGGATGCTATTTACTTTATACAGCCAATCAAAGAGAATATAGTCATGTTCCTCTCTGACATGTCAGGAAAGTCACCTCTGTATAAAAGAGCCTTTGTGTTCTTCAGTTCACCAATATCTAAGGAGTTGGTCAGTCATATAAAGAATGATGCTAGTGTACGACCACGCATAGCTGCATTGAGTGAGATGAATTTGGAATACTTTTCCATTGATAGTCAGGGTTTCATTACTGATCATGAGAGGGCATTGGAAGAGTTGTTTGGTGATGCAGCAGATATTTCTCTAGCACACAATGCTTGTATTCAGACAATTGCAACACGGATTGCTACAGTGTTTGCTTCATTGAGGGAATTTCCTTATGTTCGTTACCGTGTTGCCAAGTCAAGTTTTGATGCCTCAGCCATGGCTAGTGTTCGCGATTTAATCTCAACAAAGCTTGCCGCTGTTGTTTGGCACTGTGTTGCCAGATATAAGACTTCAATTCCAGACTTTCCACAAACTGAAACCTGTGAGTTATTGATTTTGGATCGATCTATTGACCAGATTGCTCCAGTAATTCATGAATGGACTTATGATGCCATGTGCCATGATTTGCTAAATATGGATGGAAATAAATTTGTGCATGAGGTGCCAAGCAAAACAGGGTCAACATCTGAAAAGAAAGAGGTTCTTTTGGAGGATCATGATCCTATCTGGGTTGAGCTTAGGCATGCTCATATAGCAGATGCTAGTGAAAGGCTACATGAGAAAATGACCAACTTTATATCAAGAAATAAAGCTGCACAGATTCATCAGTCAAGAGATGGAGGTGAAGTCTCAACAAGAGATTTGCAAAAAATGGTTCAAGCATTACCGCAATACAGCGAGCAGATCGATAAGCTTTCTCTTCATGTTGAGATAGCAGGGAGGATTAATAAAGTGATTAGAGAAATTGGATTACGAGAACTGGGGAAACTGGAACAGGACCTTGTTTTTGGGGATGCTGGGATAAAAGACTTGATCAGCTTTTTGAGGACAAATCAGAATATGTCTCCTGAAAATAAGATCCGATTATTGATGATTTTTGCCGCCATATATCCAGAGAAGTTTGAAGGCGACAAAGGGGAAAAGTTGATGCAGCTGGCAAAGTTATCACCTGATGATATGAAGGCTGTGCATAACATGAGATATTTGACGCTACCTGATCATAAAAAGAATTCAGGAGGCTTCTCCCTCAAGTTCGAGGTTCATAAGAAACAAGCAGCTCGAAAAGAAAAGAGTGACGAAGAAGAAACATGGCAACTTTCACGATTTTATCCTGTTATTGAGGAACTTGTTGAGAAACTTAGTAAAGGCGAATTGTCGAAGAATGAGTATCAATGCATGAATGATCCCAGCCCTTCATTCCACGAAGATCCAAATGGCACGCCGGTTCGAGTAAATCCCACCGCTCACTCCATGAGATCTAGACGTTCTGCAACATGGGCTAAACCTCGATATTCGGATGACGGGTATTCCAGTGATTCTGTACTAAGGCATGCATCTACTGATTTCAAAAATATGGGACAGAGAATTTTTATTTTTATTATTGGTGGAGCTACTAGATCTGAGCTTCGTGTCGCCCATAAACTTACTTCCAAGTTTAGGAGGGAGATCATTCTTGGTTCAACAAGCATCGATGATCCTATACAGTATTTAACGAAACTAAAGATTCTCTCTTCTCCGGAGCTTTCCCTGGATGAGCTTCAAATCTAAAGTCGCCTCTTTGTTCCCTGGGTCTCAGAAACAACATTTTCCTTATGTGAGGGCCCATTGTTACAAATTCTTTATTTGTTAATAATGCTCGCCAATACATTTTTTTGGCCTTGGACACAAATGTAAAGTAATAATGGCTTGCAAAATTTAAATTGTAAATAGTATATTTGAAGTGGACTTATGTAGAAAGCCTAACATGATAATATATACACATATTTTTTTGCTGTACCTGATGAAATATATTACACTCGATCTCGTAAAATGTACAACTATTTGATTGTAGCTTGTGTTACTGCATTGGACTGTTTTGTAAATAAGTTTGTGTTAGGATATTATGATGCAAATACAAAGCAACTTATGGATGTTGTGCATTGATAGAGCTTTGATTATACGTATTGTGTATTGTTTTTATTAAAAATGATGACTGCCTGCATTTTTTAGTAATATTTGAG

Network for GWHGAAEX002963

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00995.22	Sec1	44	644	1.50E-114

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15292	STXBP1, MUNC18-1	Synaptic vesicle cycle	map04721

Gene Ontology

GO term	Ontology	Name
GO:0006904	Biological Process	vesicle docking involved in exocytosis
GO:0016192	Biological Process	vesicle-mediated transport

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	49.300
SRP064423	SRR2545915	Juvenile tuber	33.280
SRP108465	SRR5643513	five period of Gastrodia elata	28.080
	SRR5643514	five period of Gastrodia elata	31.980
	SRR5643515	five period of Gastrodia elata	29.140
	SRR5643524	five period of Gastrodia elata	31.220
	SRR5643525	five period of Gastrodia elata	32.770
	SRR5643528	five period of Gastrodia elata	35.560
	SRR5643658	five period of Gastrodia elata	35.820
	SRR5643659	five period of Gastrodia elata	15.290
	SRR5643660	five period of Gastrodia elata	19.180
	SRR5643661	five period of Gastrodia elata	15.760
	SRR5643662	five period of Gastrodia elata	16.190
	SRR5643663	five period of Gastrodia elata	16.570
	SRR5643664	five period of Gastrodia elata	17.310
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	29.910
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	32.230
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	28.750
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	30.300
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	34.520
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	37.810
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	29.210
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	27.810
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	26.280
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	27.120
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	33.490
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	33.490
SRP279888	Gastro	Gastrodia elata tuber	19.15
	Juven	Juvenile tuber	24.55
	Mother_Gastro	Mother tuber of Gastrodia elata	48.00
	Mother_Juven	Mother tuber of Juvenile	42.44