Detail information of GWHGAAEX002974/evm.TU.scaffold_129.22
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|440684418|ref|YP_007159213.1| | 2.00E-12 | GTP-binding protein HSR1-related protein [Anabaena cylindrica PCC 7122] |
| nr | gi|743779436|ref|XP_010920185.1| | 0 | PREDICTED: translocase of chloroplast 120, chloroplastic [Elaeis guineensis] |
| Swissprot | tr|Q9SLF3|TC132_ARATH | 0 | Translocase of chloroplast 132, chloroplastic |
| trEMBL | tr|I1LIY4|I1LIY4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G11250.1} |
| TAIR | AT2G16640 | 0 | multimeric translocon complex in the outer envelope membrane 132 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000132 | 649316 | 654205 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002974
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04548.15 | AIG1 | 942 | 1099 | 1.10E-27 |
| PF11886.7 | TOC159_MAD | 1302 | 1566 | 4.00E-111 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005525 | Molecular Function | GTP binding |
| GO:0016817 | Molecular Function | hydrolase activity, acting on acid anhydrides |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 28.460 |
| SRR2545915 | Juvenile tuber | 23.180 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 22.190 |
| SRR5643514 | five period of Gastrodia elata | 17.450 | |
| SRR5643515 | five period of Gastrodia elata | 32.370 | |
| SRR5643524 | five period of Gastrodia elata | 20.410 | |
| SRR5643525 | five period of Gastrodia elata | 13.470 | |
| SRR5643528 | five period of Gastrodia elata | 19.240 | |
| SRR5643658 | five period of Gastrodia elata | 12.800 | |
| SRR5643659 | five period of Gastrodia elata | 19.670 | |
| SRR5643660 | five period of Gastrodia elata | 16.690 | |
| SRR5643661 | five period of Gastrodia elata | 20.760 | |
| SRR5643662 | five period of Gastrodia elata | 22.470 | |
| SRR5643663 | five period of Gastrodia elata | 21.570 | |
| SRR5643664 | five period of Gastrodia elata | 13.330 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 16.540 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 14.960 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 15.580 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 16.460 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 14.350 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 17.750 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 18.530 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 17.810 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 16.550 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 17.320 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 17.150 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 17.150 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 17.25 |
| Juven | Juvenile tuber | 24.75 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 21.98 | |
| Mother_Juven | Mother tuber of Juvenile | 38.95 |