Gene detail

Detail information of GWHGAAEX002977/evm.TU.scaffold_129.26

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0160	Myosin class V heavy chain
nr	gi\|743826434\|ref\|XP_010933291.1\|	PREDICTED: myosin-1-like [Elaeis guineensis]
Swissprot	tr\|Q9LHE9\|MYO1_ARATH	Myosin-1
trEMBL	tr\|F6HW23\|F6HW23_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58887.1}
TAIR	AT3G19960	myosin 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000132	739517	794850	+

Transcript Sequence
>GWHTAAEX002977 CCGGTAATGTAGTGCGAACTTTTTCCTGTAATTGAAGTTTGATCCCTCACAGATTTCAAACAGTGGAAGGCCGCTTTAACTCTCCTCCCCAAGTCTTTTCTTCCACGTTCTCTGCAACTAAAAGACTTTTTTTTTTTCCTGCCATCACATTTCGATTTCGATTTATCATTACTATTTTTTTGGTGTGTGTGCATTTGTGCTTGTTCAACCTCGGCTCCGTGCGATTCTTCTCCTGCATATCATTTGTCGGAGATCTCCCTCTCGTGCGTTCTAAAGTAACATATCTATATTATATATTTTTTGTGGTTAGCTAAGGAGTCATCAGTTCAAAGTTCGTTCATGTTCCCATTTGATCCATGTCGCTTCCTATTATTGGCAAGTTTGTGAAATTTTTTCTTTTTGGGAGTGTTTTAGGTTTTTTGGAGCTTGGATCCCGTGACACTTGTAGCGCAGCGATCGGTGAATGCCCGAATTGCCGGGGTGCGTTCCAAGGTTCTACATTCATTGATTGAACGGAGAATAGAATGGCGTCCCTGGAAATGCCGAACCACGGAATCCCTACTTCGCGAAAGAAGACGACACCGGAGAGGCCTCTCACGACCTCTCCTCGCCAGACGACGCAGCTGAGGCAGTCGGCAATTTCTAAGAAGAAGGCGACGCTTGAGAGGCATCATGGGCCGACCAAGAAGAGATCGCCTCCCGAGAAGTCCATTCCGAAGTCACGGACGACCTCTGCGCTCAAATCAGTGCAATCGCCTCCGGAACTCAGATTCTCCGATGAATCATCGCCGACGGGGCCGAAGAAAGCTGTGAACTTGTCTTCCACGTTCGAATGCGTCAAGGAATTGTATCGAGACGATGGGATTGAAATAAACAAAGTTAATGTCGCAGTAGAAGCGGGCGGTGCTAACCTTTGCTCCTCGGCGGAGGAGTATTTTAATGAATTTAGAGTCGACGATGATTCGCCCTACCGATCGATGCTTTCTGCTGGCGATAAGAGACTTTCCAAAATTGCAGAGAATACGTCGTCGCCGTCTTCTGGTTGGTTGCCTGAGAAATTTGCGCCTCTGAACGACTCCAGATGGAGCGACACCAACTGTTACGGCGCTAATAAGAAACTTCAAGTTTGGTGCAAGCTTCCAAATGGAGACTGGGTCTTAGGGAAAATATTATCGATTTCAGGGGAAGAGTCCGTTGTATCTCTTCCAGAAGGGAAAGTATGCAAGTGTAAAACCAAGGGCATTTTACCTGCTAACCCTGATATACTTGATGGTGTTGATGATCTCATGCAACTTAGCTACTTAAATGAACCATCCGTGTTTTACAACTTACAGTATCGATATGACAGAAACATGATCTATTCCAAAGCTGGGCCTGTGCTTGTTGCCATCAATCCATTTAAAGAAATTCAGCTATATGGAAGCGACTACATAGAAGCATATAAGCACAAATCTACGTCTGATCCTCATGTTTATGCAATTGCTGATACTGCCATTCATGAAATGATCAGAGATAAAATTAATCAGTCAATAGTTATAAGCGGTGAAAGTGGAGCTGGGAAAACTGAAACAGCAAAGATAGCAATGCAATATTTAGCTGCTCTTGGAGGTGGCAGTGGAATGGAGTATGAAATTTTGCAAACAAATCCCATTCTTGAGGCATTTGGCAATGCAAAAACAGCAAGAAATGATAACTCCAGTCGCTTTGGAAAGTTGATTGAAATTCATTTCAGTCCAGTTGGAAAAATTTCTGGTGCCAATATTCAAACGTTTTTACTAGAGAAGTCTAGAGTTGTTCAGTGCGCACCTGGTGAACGGTCCTATCATATTTTTTATCAACTTTGCGCTGGCGCATCAAAATCTCTAAGAGAAAAGTTGAATTTGAAAAGGGCGGAGGATTACAAATACTTGAATCGGACCAACTGCTTTTCTGTTAGTGGAGTCAATGATGCTGAAAATTTTTGTTCTGTGATGGAAGCTATGGAAGTTGTTCACATCAACCAGCAGTGCCAAGATCATGCTTATGCAATGCTTGCTACTATTCTATGGTTAGGCAACGTTACATTTGTCGTGATTGATAATGAAAACCACGTTGAAGTTGTTACAGATGAAGCTGCCAACACTGTATCTGAATTACTTGGATGTGATATCGTAGATCTAAACTTAGCTCTATCGACCCACAAAATGAGAGTTGGTAATGACCAAATTGTGCAGAAACTTACTTTATCCCAGGCAATTGATTCTAGGGATGCATTGGCAAAGTCACTATATGCTAATCTATTCGATTGGATTGTGGAAAAAATTAACAAGTCACTTGAAGCTGGAAAACTACAAACAGGGAGATCGATTAGCATTCTTGATATATATGGTTTTGAATCTTTTGAAAGAAATAGCTTTGAACAGTTTTGCATAAACTATGCTAATGAACAGCTGCAACAACATTTTAATCGCCATTTGTTCAAGTTGGAACAGGAGGAATATATTCAAGATGGCATTGATTGGGCAAAAGTTGACTTTCAGGACAACAAGGATTGTCTTAACCTTTTTGAGAAGAAACCATTAGGATTATTATCTCTTTTGGATGAGGAATCCACCTTTCCCAATGGCACAGATCTGACTTTTGCTGACAAGCTCAAACAACATCTTCATTCTTATTCTTGCTTCAAGGCAGAGAGAGGCAAGGCTTTCAGTATTTGCCATTATGCAGGAGAGGTAACATATGACTCCACAGGATTTCTTGAAAAAAATAGAGATCTGTTACACTTGGATTCAATACAACTTCTAGCTTCTTGTGCATGCCACCTTCCTAAAATATTTGCTTCAAAGGCACTTGCCCTATTGAATCTACAAGGTTGTAGTCCTTGCAGATCTAACAGTGTTGATTCCCAAAAGCTAAGTGTTGCAATGAAGTTTAAGGGACAACTTTTTCAACTACTGCATAGGCTTGAGAGCACGACACCTCACTTTATACGCTGTATCAAGCCAAACAAGCTACAACTTCCTGCATTGTATGAACAAGATCTTGTGCTTCAGCAGCTTAAATGCTGTGGGGTTCTTGAAGTGGTTCGTATATCTAAGTCGGGATATCCTACTAGGATGTCTCACAAAAAGTTTGCTAGAAGATATGGCTTCCTTCTTCTTGGAAATATTGCTTGTCAAGATCCTCTTAGCGTATCAGTGGCAATTCTTCATCAATTTAACATTCTTCCTGAAATGTATCAAGTTGGATATACCAAGTTGTTTTTCAGAACTGGCCAGATTGGTGCTCTTGAAGATACCAGGAATCGTACCCTTCATGGTATTTTGAGAGTTCAGAGTTGTTTTAGAGGCCATCAAGCACGTCTTTATGTGAAGGAGTTTAGAAAAGGAATTGTCATGTTGCAATCATTTATTAGGGGTGATAAAATGAGGCAAATATACTTGAGCACACTACAGAAGCATAGAGCAGCTGTTGTCTTACAAAAACATGTCAAATGCCAACTTTCCAAGAAGCGATATCTCAGTGTTCATGGAGCATCAATTGTTATGCAGTCTGTAATACGTGGATGGCTCGTGAGACGCTGCTCTGGAGATGTTGGATCAATGAAACTATTTGATGACAAGAAGGGTGCAGAATCAGACCAAGTGGTGGTCATCCATGCTTCCGTTCTGGCCGAGATGCAGAGGAAGGCTCTGAAGATCGAAGCCTCGCTGAGGGAGAAAGAAGAGGAGAATGAGATGCTTCATCAGAGACTTCAACAATATGAGGGCCGGTGGTCGGAGTACGAGGACAAAATGAAGTCCCTTGAAGAGGTCTGGCAGAAGCAAATGCACTCGCTTCAGTCCAGCCTCTCGACCGCGAGGACAAGCCTTGCGGTCGACGAGACGGACCGAAGTTGGGACGGCATCTGCAACGACAACCGAAATTGCGGGGATGAGAGGGCTGTTCAGCCCAATGCCGGCGCGGGGTTCGATGTGGTGAGCCGGCTGGCCGAGGAGTTCCGGCAGAGGACGCAGGTCTTCGCCGACGACGCGAAGTTCTTGGTGGAGGTGAAGACCGGGCAGGAGGAAGCAAATCTGGATCCACAGAAGGAGCTGAAGAAGCTGCAGCGGAGCTTTAAATCCTGGAAAAAGGAGTTCGGCGTGCATTTGCGGGAGACGGGGATAATCATTAGCAGGCTGTCCGGCGAGGAGCCGAATTCGGAGAAGGCAAGGAAGCGATGGTGGGTGAGGCTGAACGGCGGCAGCCCCAAGGCTGCGCCAAAGTCACTGTGAAGTGCTGCTTCTTTTGTGTTGTGTGTTGTTGTCCGTGTAAAGAAGAGGTTTAGTGGCTTGCTTTCTTCCATTGTGTGCTCTGCAGCGAGCTCAGTATTTGTGCATCAAAATGTTTTTTATTGTATCCACATTGGGCTGAACACTCTAGTGTTTATATATCTAATAATATCATTTTAAATCTACTCGTGTTCTTTTCATTATTTT

Network for GWHGAAEX002977

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00063.20	Myosin_head	251	908	5.80E-237
PF00612.26	IQ	972	991	0.13
PF00612.26	IQ	997	1012	0.0098

Protein Sequence

>GWHPAAEX002977
MASLEMPNHGIPTSRKKTTPERPLTTSPRQTTQLRQSAISKKKATLERHHGPTKKRSPPEKSIPKSRTTSALKSVQSPPELRFSDESSPTGPKKAVNLSSTFECVKELYRDDGIEINKVNVAVEAGGANLCSSAEEYFNEFRVDDDSPYRSMLSAGDKRLSKIAENTSSPSSGWLPEKFAPLNDSRWSDTNCYGANKKLQVWCKLPNGDWVLGKILSISGEESVVSLPEGKVCKCKTKGILPANPDILDGVDDLMQLSYLNEPSVFYNLQYRYDRNMIYSKAGPVLVAINPFKEIQLYGSDYIEAYKHKSTSDPHVYAIADTAIHEMIRDKINQSIVISGESGAGKTETAKIAMQYLAALGGGSGMEYEILQTNPILEAFGNAKTARNDNSSRFGKLIEIHFSPVGKISGANIQTFLLEKSRVVQCAPGERSYHIFYQLCAGASKSLREKLNLKRAEDYKYLNRTNCFSVSGVNDAENFCSVMEAMEVVHINQQCQDHAYAMLATILWLGNVTFVVIDNENHVEVVTDEAANTVSELLGCDIVDLNLALSTHKMRVGNDQIVQKLTLSQAIDSRDALAKSLYANLFDWIVEKINKSLEAGKLQTGRSISILDIYGFESFERNSFEQFCINYANEQLQQHFNRHLFKLEQEEYIQDGIDWAKVDFQDNKDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFADKLKQHLHSYSCFKAERGKAFSICHYAGEVTYDSTGFLEKNRDLLHLDSIQLLASCACHLPKIFASKALALLNLQGCSPCRSNSVDSQKLSVAMKFKGQLFQLLHRLESTTPHFIRCIKPNKLQLPALYEQDLVLQQLKCCGVLEVVRISKSGYPTRMSHKKFARRYGFLLLGNIACQDPLSVSVAILHQFNILPEMYQVGYTKLFFRTGQIGALEDTRNRTLHGILRVQSCFRGHQARLYVKEFRKGIVMLQSFIRGDKMRQIYLSTLQKHRAAVVLQKHVKCQLSKKRYLSVHGASIVMQSVIRGWLVRRCSGDVGSMKLFDDKKGAESDQVVVIHASVLAEMQRKALKIEASLREKEEENEMLHQRLQQYEGRWSEYEDKMKSLEEVWQKQMHSLQSSLSTARTSLAVDETDRSWDGICNDNRNCGDERAVQPNAGAGFDVVSRLAEEFRQRTQVFADDAKFLVEVKTGQEEANLDPQKELKKLQRSFKSWKKEFGVHLRETGIIISRLSGEEPNSEKARKRWWVRLNGGSPKAAPKSL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding
GO:0003774	Molecular Function	motor activity
GO:0051015	Molecular Function	actin filament binding
GO:0005524	Molecular Function	ATP binding
GO:0016459	Cellular Component	myosin complex

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	3.310
SRP064423	SRR2545915	Juvenile tuber	4.310
SRP108465	SRR5643513	five period of Gastrodia elata	3.690
	SRR5643514	five period of Gastrodia elata	3.830
	SRR5643515	five period of Gastrodia elata	3.590
	SRR5643524	five period of Gastrodia elata	3.220
	SRR5643525	five period of Gastrodia elata	2.910
	SRR5643528	five period of Gastrodia elata	2.860
	SRR5643658	five period of Gastrodia elata	2.490
	SRR5643659	five period of Gastrodia elata	1.760
	SRR5643660	five period of Gastrodia elata	1.930
	SRR5643661	five period of Gastrodia elata	1.940
	SRR5643662	five period of Gastrodia elata	1.830
	SRR5643663	five period of Gastrodia elata	1.480
	SRR5643664	five period of Gastrodia elata	1.480
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	3.690
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.510
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.420
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	4.240
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	5.060
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.070
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	4.070
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	5.310
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.050
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	4.170
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.680
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.680
SRP279888	Gastro	Gastrodia elata tuber	2.25
	Juven	Juvenile tuber	3.80
	Mother_Gastro	Mother tuber of Gastrodia elata	5.57
	Mother_Juven	Mother tuber of Juvenile	3.87