Detail information of GWHGAAEX002978/evm.TU.scaffold_129.27


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|46447560|ref|YP_008925.1|6.00E-20hypothetical protein pc1926 [Candidatus Protochlamydia amoebophila UWE25]
KOGKOG19472.00E-156Leucine rich repeat proteins, some proteins contain F-box
nrgi|743776039|ref|XP_010918416.1|0PREDICTED: F-box/LRR-repeat protein 4 [Elaeis guineensis]
Swissprottr|Q9SRR1|FBL12_ARATH4.00E-28F-box/LRR-repeat protein 12
trEMBLtr|M0SZX0|M0SZX0_MUSAM2.00E-172Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P19410_001}
TAIRAT5G233402.00E-156RNI-like superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000132797208807845-
Transcript Sequence

Network for GWHGAAEX002978

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13516.5LRR_61041240.00032
PF13516.5LRR_61281500.002
PF13516.5LRR_61782021.1
PF13516.5LRR_62052260.075
PF13516.5LRR_62572800.6
PF13516.5LRR_63103280.03
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms10.870
SRR2545915Juvenile tuber11.360
SRP108465SRR5643513five period of Gastrodia elata9.990
SRR5643514five period of Gastrodia elata10.330
SRR5643515five period of Gastrodia elata8.380
SRR5643524five period of Gastrodia elata9.370
SRR5643525five period of Gastrodia elata9.300
SRR5643528five period of Gastrodia elata7.310
SRR5643658five period of Gastrodia elata9.340
SRR5643659five period of Gastrodia elata8.790
SRR5643660five period of Gastrodia elata8.100
SRR5643661five period of Gastrodia elata8.200
SRR5643662five period of Gastrodia elata8.580
SRR5643663five period of Gastrodia elata7.590
SRR5643664five period of Gastrodia elata7.430
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_19.980
SRR6049655Rhizomagastrodiae_C368-T10_good_112.580
SRR6049656Rhizomagastrodiae_C368-T07_good_110.630
SRR6049657Rhizomagastrodiae_C368-T07_good_19.400
SRR6049658Rhizomagastrodiae_C368-T04_good_19.020
SRR6049659Rhizomagastrodiae_C368-T04_good_19.950
SRR6049660Rhizomagastrodiae_C368-T01_good_110.540
SRR6049661Rhizomagastrodiae_C368-T04_good_110.780
SRR6049662Rhizomagastrodiae_C368-T01_good_110.620
SRR6049663Rhizomagastrodiae_C368-T01_good_110.700
SRR6049664Rhizomagastrodiae_C368-T10_good_111.080
SRR6049665Rhizomagastrodiae_C368-T10_good_111.080
SRP279888GastroGastrodia elata tuber 9.06
JuvenJuvenile tuber8.53
Mother_GastroMother tuber of Gastrodia elata 7.58
Mother_JuvenMother tuber of Juvenile 4.94