Detail information of GWHGAAEX002982/evm.TU.scaffold_129.31
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG1689 | 1.00E-102 | mRNA cleavage factor I subunit |
| nr | gi|672141438|ref|XP_008794550.1| | 6.37E-134 | PREDICTED: cleavage and polyadenylation specificity factor subunit 5-like [Phoenix dactylifera] |
| Swissprot | tr|Q8GXS3|CFIS2_ARATH | 2.00E-126 | Pre-mRNA cleavage factor Im 25 kDa subunit 2 {ECO:0000303|PubMed:18479511} |
| trEMBL | tr|F6I6I8|F6I6I8_VITVI | 2.00E-134 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB62381.1} |
| TAIR | AT4G25550 | 1.00E-102 | Cleavage/polyadenylation specificity factor, 25kDa subunit |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000132 | 823257 | 868622 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002982
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13869.5 | NUDIX_2 | 18 | 204 | 1.90E-81 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14397 | NUDT21, CPSF5, CFIM25 | mRNA surveillance pathway | map03015 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006378 | Biological Process | mRNA polyadenylation |
| GO:0003729 | Molecular Function | mRNA binding |
| GO:0005849 | Cellular Component | mRNA cleavage factor complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 7.280 |
| SRR2545915 | Juvenile tuber | 11.260 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 28.350 |
| SRR5643514 | five period of Gastrodia elata | 25.210 | |
| SRR5643515 | five period of Gastrodia elata | 22.460 | |
| SRR5643524 | five period of Gastrodia elata | 26.500 | |
| SRR5643525 | five period of Gastrodia elata | 12.660 | |
| SRR5643528 | five period of Gastrodia elata | 13.030 | |
| SRR5643658 | five period of Gastrodia elata | 13.990 | |
| SRR5643659 | five period of Gastrodia elata | 19.730 | |
| SRR5643660 | five period of Gastrodia elata | 20.980 | |
| SRR5643661 | five period of Gastrodia elata | 18.750 | |
| SRR5643662 | five period of Gastrodia elata | 19.360 | |
| SRR5643663 | five period of Gastrodia elata | 17.520 | |
| SRR5643664 | five period of Gastrodia elata | 16.350 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 20.730 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 34.770 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 20.830 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 17.830 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 19.430 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 20.040 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 14.710 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 19.990 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 26.590 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 21.920 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 30.470 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 30.470 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 20.35 |
| Juven | Juvenile tuber | 23.03 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 21.83 | |
| Mother_Juven | Mother tuber of Juvenile | 23.80 |