Gene detail

Detail information of GWHGAAEX002990/evm.TU.scaffold_129.43

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1246	4.00E-175	DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain
nr	gi\|672190819\|ref\|XP_008775348.1\|	0	PREDICTED: probable lysine-specific demethylase ELF6 [Phoenix dactylifera]
Swissprot	tr\|Q10RP4\|SE14_ORYSJ	0	Lysine-specific demethylase SE14
trEMBL	tr\|M0RNN4\|M0RNN4_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P02040_001}
TAIR	AT5G04240_1	4.00E-175	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000132	1049032	1068774	+

Transcript Sequence
>GWHTAAEX002990 CCCGCGAGTCCGTTGATCGAAACAGAGGACTTCATATATACCACAACTCACAGATCCTCTTTACTGCCGCCTCTCCCGGCGGTCCTCCCTATAATCTAGGGTTCGCGAAATGCTTTTTTCAAAACCTTAATCGTATCTGAAAATAATGGCGGAAAGCGATATCCCACTCTGGCTCAAGAATCTCCCTCTTGCACCTGAGTATCGGCCCACAGAAACCGAGTTCGCCGATCCCATTGCGTTCATCTCCCGCATCGAACGCGAAGCCGCCTCCTTCGGCATCTGCAAGGTTATACCTCCGCTTCCCAAACCCTCCAAGAAGTTTGTCCTCTCAAATCTTAACCGATCCCTCTCTAAGTCCCCAGAACTTGGAGATGCTAGTGCCGCTGCCGGTCCCTCGCCGGAGTTTGCTGTTTTCACCACCAGACAGCAGGAGCTCGGGTCCCGCCGTTCACGCCCTGCTTTTCCCAAACAAGTATGGCAGAGCGGGGACGTATATACACTGGAGCAATTCGAGGGCAAATCCAAGGCGTTTTCCCGCTCACGGCTTGGTGGCTTCAAGGAGGTAACCCCTTTACTAGTGGAATCGCTCTTCTGGAAGGCAGTGGCTGACAAGCCCATATATGTTGAATACGCCAATGATGTCCCTGGGTCTGGCTTTGCATTGCCCGAGGAACCTTTTCGCTACGTCTCCTGGAGGAGGAATCGGTGGAATCGGAAGCGACGATATCTCAGAAGGAATGGGAACGAACAGAAATGTAGATTCAGGTTAATGAGTTCCAGCGATAATGGGAAGCCACTGCGGAGTTTAGGTTCGGACAATAATATGGTGGGAAATAAAGGGACTTCTGGTTGGAGACTATCAAACAGCCGTTGGAACTTGCAAGTTATTGCCCGCTCCCCGGGATCCTTGACACGCTTTATGCCCGATGATGTGCCAGGAGTTACGTCTCCCATGGTTTATATTGGGATGCTCTTCAGTTGGTTTGCTTGGCACGTGGAGGATCACGAGTTGCATAGCATGAATTTCCTTCATATGGGCTCTCCAAAGACATGGTATGCGGTTCCTCAGGATCATGCGGCAGCTTTGGAGGAGAGTATCAGGATTCGGGGTTATGGTGAAAGTGTTGATCGGCTAGCTGCTTTTACCATGCTGGGTGAGAAGACAACCCTTTTGTCTCCTGAAGTTCTAGTAGCTTCCGGTATTCCTTGTTGCAGATTAGTTCAGCATCCAGGTGAATTTGTTGTGACATTTCCAAGGGCGTACCATGTAGGATTCAGTCATGGATTTAATTGTGGGGAGGCTGCTAATTTTGCTACTCCAGAATGGTTAAAGGTGGCTAAAAAAGCTGCAATAAGAAGGGCAGCAATGAATCATCTTCCAATGCTTTCGCATCAGCAGCTTCTATACATCTTGGCAATTTCATTTGTATCAAGAGTTCCTAGGGCCCTTATCTCAGGTGCACGGAGTTCACGCCTGAGAGAGCGTAAGAAAGAAGAAAGAGAAATTATTGTTAAGAAGGCTTTTCTGAAAGACATGATGACTGAAAACCATCTTTTGTGTACTCTCCTTGAGAAAGAGTCTACTTCTACCCCAGTTCTGTGGGAACCCTATATGCTGCCTTCCCCATGTTCTGTTTCCCAGTCTCATCCTCCTGTTTTGCTTGAAGCACAGAACTATGGTGACCAATATGGATGCTTCGACCTCAATCAGCAGACAGAAATCAACACAACAGGAGAAAGTTTCGACAGAGTTCATGATTATCATGCCAAGAAATCTGAAGCATGTTCTTTAATGAAAGCGTGCCATGTAGCTCCATATGCTGAGTACTACAGGAATCCTATTCATGGTGGATTAATAACTCCTGATGTGGAAGTGATGGAAATTGTGGAAGAAGAGGGTGATTTGCCTGTTGGCTTGAATGTTGATTCTGGATCATTGGCATGCGTTTCATGTGGAACACTTGGCTATCCATTTATGGCTATCATCCAGCCTTCAGCAAAAGCATCGAAGATAATATTTTCCATTAATTGTGAAGGACCTTGCGAAAAATCAGATAAATTCCAGTGTTTTATTTCATCTCCATGTCTTCAGAATTATGCTTGCAACTTTACTACAGAAGAAAGATGTACTAAAGTTGAAAAACATGCAAATCTATATCCAAGTTGTCAAATGTTTCCAGAATCAAGCGTGCAGCTTTCAAGTGAACATGATATGCCTCTTCATATGGATAAGCGGTCATTTCCTAATTCTTTTTCTGTGGATTCTCTGGTAAATGAGAGAGAAAAATTAATTTCAACAGACTCTCAAACTGATTGCAATAAATCCTTTTTTGCTACCAATGCATTGGTTTCCAATGATTTTAGCCCTTGTGATAGTGTGAAAGAATTTGGGACAATTTGGCATGTTAAGATTAAAAAGATTGTTGAAAATGGCTTTGGTTCTACATCTGGGACTTTTTCTAGAGGTGACAAAGAGTCATCTGCGAAAGAAATGGTGGATATTTCAGAGTGTGAAGGGTATAATGTACTTCTCAAACCAAGGGTCTTTTGTTTGCAGCATGCTATTGAAGTTGAGGAACTTTTGGCCAAAATGGGTGGAGCACATATACGTGTTATATGCCATTCAGATTATCTGAAGTTTAAAGCGTATGCTGCATCCATTGCTGAGGAAATCGGGTTGGAATTGCGCTTAAGGGATGTTCCTCTGGAGAACGCATCCCCCGATGATCTAAACTTGATCAACGTCTCAATCGACGAGGAGCATGAAGAAGACGGCAGGAATTGGACGTCGAAGCTGGGCGTGAATCTGAGGCACTCTGTGAAGCTGAGAAGGCAACAATGTGTATCATCATCTCAAGAGAAGCTACCGTCGGCCCTCAGCGGAGTGTTCTCGTCGTCGACCTCAGCTAATTTTGAGGCTTCAGGCCTCAGATGGCTCTGCCGGAAGTCTCGCACTCCGGTGAACAAGCCTGCCGGTGCTACTGCGGAGGCCGATAGCAGCATCAAAACCATCCGGGTTTACCAGAGCCGCAAGAAGAAAACGAGCGAAGGCAGCTGCTGCATGCCCAAAGGTGAAGCAGAGGTGCCGAGAGCCGCCATCGCTTTGACGGCCGTTGTTAAATCGTATGCGAAGCGGAAGAACAAAAGAAAGCGGGAAGCAGTGGCTGAACTGGGCGGCACCGGCTTCGCTCGCAGCCCGTGCGAAGGGCTGAGACCCAGGAAGGGGAAAGAGGCGCAGCAGCAGCCCGCCGCCGCCGCCGCCGCCTTCGGCTGCGTCCTCTCTTTCAGCTTCGTCTCTGATTTCAGCCACCGAGGCGGAAAGAAAACCGGCCATTTTGTTTCCTCCAGCAGCCGTTAAGTAGCCTCTTCTGATCTTGTGCTTTATTTTTTATAATTTTCTTTTCACTCTAAAGCGTTGTAGGATTATAATTATGCATGGAACTTTGCTTGCCTTTGCTTTTGAGCTTAAGGTTGCCTCAAAAGTGACCAATGCAATTCGGGACTCCTGCGTTTTAGCTGTGCTCGTTTGTTTCAGGTTCTTTAGCTTGCAGCCAAATATTTGTCCCAATCAGCTTTTGATTGGTTCCCATTTTGTTTAAAGCACTTTTTCTTTGAATTTAAATTAGTTGATTAGTTTACATAAGCTTTTCTTAGTTTAAGCAATATTAAGTTGTTCTAAGT

Network for GWHGAAEX002990

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module6

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02375.16	JmjN	17	50	1.90E-13
PF02373.21	JmjC	270	389	2.60E-37

Protein Sequence

>GWHPAAEX002990
MAESDIPLWLKNLPLAPEYRPTETEFADPIAFISRIEREAASFGICKVIPPLPKPSKKFVLSNLNRSLSKSPELGDASAAAGPSPEFAVFTTRQQELGSRRSRPAFPKQVWQSGDVYTLEQFEGKSKAFSRSRLGGFKEVTPLLVESLFWKAVADKPIYVEYANDVPGSGFALPEEPFRYVSWRRNRWNRKRRYLRRNGNEQKCRFRLMSSSDNGKPLRSLGSDNNMVGNKGTSGWRLSNSRWNLQVIARSPGSLTRFMPDDVPGVTSPMVYIGMLFSWFAWHVEDHELHSMNFLHMGSPKTWYAVPQDHAAALEESIRIRGYGESVDRLAAFTMLGEKTTLLSPEVLVASGIPCCRLVQHPGEFVVTFPRAYHVGFSHGFNCGEAANFATPEWLKVAKKAAIRRAAMNHLPMLSHQQLLYILAISFVSRVPRALISGARSSRLRERKKEEREIIVKKAFLKDMMTENHLLCTLLEKESTSTPVLWEPYMLPSPCSVSQSHPPVLLEAQNYGDQYGCFDLNQQTEINTTGESFDRVHDYHAKKSEACSLMKACHVAPYAEYYRNPIHGGLITPDVEVMEIVEEEGDLPVGLNVDSGSLACVSCGTLGYPFMAIIQPSAKASKIIFSINCEGPCEKSDKFQCFISSPCLQNYACNFTTEERCTKVEKHANLYPSCQMFPESSVQLSSEHDMPLHMDKRSFPNSFSVDSLVNEREKLISTDSQTDCNKSFFATNALVSNDFSPCDSVKEFGTIWHVKIKKIVENGFGSTSGTFSRGDKESSAKEMVDISECEGYNVLLKPRVFCLQHAIEVEELLAKMGGAHIRVICHSDYLKFKAYAASIAEEIGLELRLRDVPLENASPDDLNLINVSIDEEHEEDGRNWTSKLGVNLRHSVKLRRQQCVSSSQEKLPSALSGVFSSSTSANFEASGLRWLCRKSRTPVNKPAGATAEADSSIKTIRVYQSRKKKTSEGSCCMPKGEAEVPRAAIALTAVVKSYAKRKNKRKREAVAELGGTGFARSPCEGLRPRKGKEAQQQPAAAAAAFGCVLSFSFVSDFSHRGGKKTGHFVSSSSR

Gene family

Gene family	subfamily
Transcription Factors Family	Jumonji

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	39.230
SRP064423	SRR2545915	Juvenile tuber	18.740
SRP108465	SRR5643513	five period of Gastrodia elata	8.040
	SRR5643514	five period of Gastrodia elata	6.850
	SRR5643515	five period of Gastrodia elata	6.700
	SRR5643524	five period of Gastrodia elata	6.690
	SRR5643525	five period of Gastrodia elata	8.290
	SRR5643528	five period of Gastrodia elata	6.970
	SRR5643658	five period of Gastrodia elata	7.890
	SRR5643659	five period of Gastrodia elata	8.920
	SRR5643660	five period of Gastrodia elata	11.290
	SRR5643661	five period of Gastrodia elata	10.590
	SRR5643662	five period of Gastrodia elata	11.460
	SRR5643663	five period of Gastrodia elata	9.580
	SRR5643664	five period of Gastrodia elata	13.920
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	15.570
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	11.450
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	13.570
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	21.070
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	23.820
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	30.410
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	19.750
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	21.100
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.260
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	14.600
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	9.450
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	9.450
SRP279888	Gastro	Gastrodia elata tuber	13.05
	Juven	Juvenile tuber	14.14
	Mother_Gastro	Mother tuber of Gastrodia elata	9.34
	Mother_Juven	Mother tuber of Juvenile	8.68