Gene detail

Detail information of GWHGAAEX002995/evm.TU.scaffold_129.48

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2173	Integral membrane protein
nr	gi\|743776742\|ref\|XP_010918784.1\|	PREDICTED: autophagy-related protein 9-like [Elaeis guineensis]
trEMBL	tr\|M0RWN2\|M0RWN2_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P03240_001}
TAIR	AT2G31260	autophagy 9 (APG9)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000132	1141465	1177435	+

Transcript Sequence
>GWHTAAEX002995 ATGATGTCTAGTGCTCGAAAGTGGTTTCTTGAATCTATCAGATTGAAATGGCATGCGAGAAATGAATCTTCATTGAGCTCTCAGTTGCTGAATAATGAGCCTTCAGAGATAGAACTATCGGATTATCGAAGGCTGCCTGGTTCTGACATTGAGAATCCTTCAGAACTTCTTAGTGGTGAAGGGCTGAAACCAGAGCCAATTACTGACTTGGATTTGTTCTTTGAAAGTTTGTACAATTATTATTGTGGAAAAGGACTCCTATGTATTGTGATTAAGTGGATAGTCGAAGTTCTAACAGTGATGTTTGTATTAGGATTCATTTGGTTTTTCTTATTGGTTGTTGATTGGCATGCATTGCGCAATGCAAAATGTGGAATAGAAGCAGTTGAGTCAGGGCAAAAGCCTTGCGAACTTGCAAAAGAAGTCATCAATCATCATCCATTAGTTCCTTTAACATTTACAAAAGGACTCATTGTTGGTTGTATGATTATATTAACTATATACGGTCTCTTCAATTTCTTGAAGTTCTTTGTGCAGTTCAAAAATACACTGAAGATTCGTCATTTTTATTATTACAGCCTTAATGTTACTGACCGTGAGATGAGGACTTCCCCCTGGCCCACAATTCTTGAAAAGGTGGTTCAAATGCAAAAGGAGCAGCAACTTTGTGTGGTGAAGGATCTCTCTGCCCATGATATTGTAATGCGTATAATGCGTAAAGAAAATTACTTGATTGGAATGCTCAATAAAGGTGTTCTTGCCCTTCCAATATCATGGTGGGTGCCTGGAGCTGGCCCACCTGTCAACTCTAAGGCAAGTGGTGGTAAAAATCATTTAATATTACCTAAAACACTCGAATGGGCCCTGAATTGGTGCATATTTCAGAGCATGTTTGACAGCAAGTTTTGCATTCAAAGGGATTTCGTTACAAATCCTTCATTACTTAAAAAGCGGCTTGTGGTAATTGGGGTTGTAATGCTTATATTATCGCCCTGCCTTGTGATTTTTATGCTGGTATATCTTTTCTTATGGCATGCTGAACAATTTTATAACCACCCAAGGACAGCATCTTCGCGAAGATGGTCCAACTTATCAAAGTGGATTTTCAGAGACTTCAATGAGGTTGATCATTTCTTTAGGCATAGACTGAACAATGGCGTGGTCAACGCCTCAAACTATCTGAACCAGTTCCCTTCGCCTCTCATTTCCACAATTGCCAAGTTTGTATCTTTTGTGTCTGGTGGTTTTGCTGCCATTTTGATTATAATTGCTTTTCTGGATGAATCACTTTTGGAGGGCCAGATATTTGGGCGTAACTTGTTTTGGTATGCTGCTATATTTGGAACAGTGACTGCTATAGCCAGAGCTGTGGTAACCGATGAACTTCATGTTCTTGATCCTGAAGGAGCAATGACTTTGGTTGTCCATCAGACACATCATATGCCAAAGAGATGGAGGGGAAAAGAAAATAGTGATAAAGTTCGAGCAGAGTTTGAAACCCTTTTTCAGTACACTGGAATGATGCTGTTGGAGGAAATGGCTTCGATCTTTATCACTCCGTTTCTTCTTATATGTGTTGTTCCGAAGCGTGTGGATGATATCTTACAATTCATTTCAGATTTCACTGTGGATGTTGAGGGTGTTGGCCATGTCTGCAGTTTAAGCTTGTTTGACTTTGAAAGGCATGGTAACACAAAGTATGCTTCTCCATTTAATGCTTCCAAAGACATGAGGGGCTGCCAAGGGAAAATGGAAAAGTCATTCTTAAGTTTTCAAAGAGTCTATCCTACTTGGGAACCGAGCGTGCATGGTCAACAATTCCTCGCAAACCTCCGAAATTTCTGGGAACAAAAGCGGAGAGACGAACTGGAGCAGGAATTCTCTCCTCTACAGACAATGAGACAAGTCAATCAAGGCTTACTGGTCAAGGGTGAAGTAATCCACAGGTCTCGTCCTCATGATGCGCACAAGCACTACGGTTGTTCTGTTCCCATTTATAGCCCCGCCCCTGATCTGAGGACTTTAGACTTTTACTACTTATCCCAGCCCCTGCTTCCCTCAGATGCCTCCCTGCCTTTCAACTATGAAAAGGGATTCAAGCCAAGGCAAGAATCGTGGCGGCCATTTGACCAATATTTAGATGATGAAGTCAAATTAGTAAGTGAAGGAATTGCCGTGCATGACAGACAAGGGTCCCAGATTGAGGCCTCCACATCAAGCCCTTTCTTTTGGGATCAGTATGGAGCAGAGCAGTACCCTGCAATGGGTAATTGGTGGTCCCGTTCAATTCATCGGTCATCTGGGCATCAGGCCAGCTTCCTTGAGCCCCCCATTATTGCCCACCATGATTTCAAGGAAGATTATGACGATTTATCAGAGAAAAGTGCGGAGGAACACGGCAACATTGGCGCTAGTGGCAGCCGTGAAGGCAGGTGGAACCGCCAATCCTTGTGGAGAACGACATATATGGATGGCGGCGAAGATGATGATGAAGGCTTCGGCCTGCATTTTGTTGATGAAGCAAAAGATGGGAGATCTCAGCATGTTTATGGCAATTCTCTTGCAAATCTTCCTGTAAGAATTATACCAAGGAGCAATGATCCTGTAGAATGA

Network for GWHGAAEX002995

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04109.15	APG9	200	563	9.70E-127

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K17907	ATG9	Autophagy - animal	map04140
		Autophagy - yeast	map04138
		Autophagy - other	map04136
		Mitophagy - animal	map04137

Gene Ontology

GO term	Ontology	Name
GO:0006914	Biological Process	autophagy

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	13.670
SRP064423	SRR2545915	Juvenile tuber	9.280
SRP108465	SRR5643513	five period of Gastrodia elata	13.030
	SRR5643514	five period of Gastrodia elata	10.940
	SRR5643515	five period of Gastrodia elata	11.030
	SRR5643524	five period of Gastrodia elata	11.300
	SRR5643525	five period of Gastrodia elata	15.880
	SRR5643528	five period of Gastrodia elata	20.580
	SRR5643658	five period of Gastrodia elata	17.620
	SRR5643659	five period of Gastrodia elata	9.750
	SRR5643660	five period of Gastrodia elata	9.960
	SRR5643661	five period of Gastrodia elata	10.130
	SRR5643662	five period of Gastrodia elata	10.060
	SRR5643663	five period of Gastrodia elata	10.530
	SRR5643664	five period of Gastrodia elata	9.250
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.090
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	16.610
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.790
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	10.740
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	14.910
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	16.340
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	12.750
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	15.740
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.230
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	12.060
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.190
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.190
SRP279888	Gastro	Gastrodia elata tuber	11.81
	Juven	Juvenile tuber	15.32
	Mother_Gastro	Mother tuber of Gastrodia elata	53.55
	Mother_Juven	Mother tuber of Juvenile	27.86