Gene detail

Detail information of GWHGAAEX002997/evm.TU.scaffold_129.49

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|442555430\|ref\|YP_007365255.1\|	5.00E-34	SNF2 family domain-containing protein [Lawsonia intracellularis N343]
KOG	KOG1001	0	Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily
nr	gi\|743776828\|ref\|XP_010918825.1\|	0	PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3 [Elaeis guineensis]
Swissprot	tr\|Q9FIY7\|SM3L3_ARATH	0	Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 3
trEMBL	tr\|F6H8H8\|F6H8H8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB48521.1}
TAIR	AT5G43530	0	Helicase protein with RING/U-box domain

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000132	1230400	1245085	+

Transcript Sequence
>GWHTAAEX002997 TTCTCTTCTCTCCCGATTTCTACTCATGGGGTTCCAGACCTCGCCTGAGCCTCGAGTCCTCCTCGCCGGCGAGATCTTCAGAATAAGAACTATTTTGGGGGGCGAAATCCCAGAATCCGACATTCTCCAAGCCCTCGCCCTGGCCGGAAACAACACCCATCGAGCTATCAACGTCCTGCTCGAGTCCCCCAGGCCTTCATCCAAGAAGGAAGAACCAGTAGCAGTTTCTTATGCAGATCCCATCTCCGAGCCTGAACAAGAAGTGCAGAAGGAAGAGCTTGAATCGCCGTTGACGATAACTGAAGTTGCCCTGAAAAAGTTTGAGGAAGACTTGAACATTGATCAAAAAGAAGGCTCCCAGGAAAAGAATGAAATGTCAGAGGAAAGCGGCGATAATTTCTCCATGCTGACTGCCCACTTTTCTCCCTATATCAATGCTCGACGAATCAGGGCTGTTCCGCCGAACTCCTTACTAGGGCCTGACTCTGATCGGAGGCTTCAAGTGGTATCAAAAAATCCAGATCTTGTTGAAATGGGGGAATTTCTTGAAGAACCCGACTGGTTTCTTGTGGGGAGATCATATGTGATGGGATTGGCTACAACTCGCGGTTGGGGAAAGCTGGAATCAAACGAGATTGTTTACTTCAATTTTCCAAAGATTATAGAAGGCAAGTCTAATGGGAAACGATGGGTTAGTTCGAAGGCTGCAGCTGCGACTTCTGAGATTGTCCGCTTTTCAACAAAGCGTTCGGGTGAGATAGGAAGACTTCCTCCTGAATGGTCTCAATGCCTCATTCCTCTTGTGCATTCTGCCAAGGTGAAGGTGCGTGGTCGATGCGTTAGTACACCTGAAGAACTTAGCTTAATGAAAGAGATCACGCTATATGTCAGCTTTTATATTCACAGTTCTGTTTTTACTGAGGGTGGTGAATCCTCTTGGAAGCTGGAAACCACAACTGATAATTCAGCGCTGCATCCTCTCCGTAATCTCTTCATTCTGCTGAAGATGAAACCGTTTAAGCAGGCTAATTTCACTCCAGAGGAGCTTCATAGTCGCAAGAGATCACTAGACATAAAAAATCAAGGATGCAAACAATTAGAGGGTCTTGCAAAGAGAAGAAAGGGTGATGCAACTTATATACAGCAGGGTGATGATGACCAAGCTATCTCTGAAGCATCTCTTAACAAACTAGTTGGAACAGCAGAAGTTAATAGCTTATTGGAAGCTGAGCCCCCATGTTCCCTCCTTTCTGATTTGTGGCCGTACCAAAAACAAGCCCTTTATTGGATGTCTGAGTTAGAGAAAGGAATCAATGCTGAACAAGCAGCAAGAACTCTTCATCCTTGTTGGTCTGCATATAATATTTGTGACAAGAGGGCTTCTGCAGTCTATGTAAATGTGTTTTCTGGAGAAACTACAACTCAATTCCCAAGTGCTACACAGATGGCTAGAGGAGGGATTTTAGCTGATGCTATGGGACTTGGAAAGACTGTCATGACTATAGCACTAATCCTTGCAAATCCAAATAGAGCAGTGCTTGATAAAGATGATACCAATGGGAAAGCATTGAACGAAACAGAAAGAAGCTTGAAGAGAAGTTCACCCAATGTGAAAGGAGGCACGCTCATTGTTTGCCCAATGGCATTGTTGGGTCAGTGGAAGGATGAATTAGAGGCACATTCAATACCAGGTTCTGTTTCTGTTTTTGTGTACTACGGAGGGGAGAAGTCTAATGTTTTTCGAGAAATTTCGAAGCATCATGTAGTCTTGACAACATATGGTGTCTTAACGTCTGCCTATAAAGCTGGATCTGAGAAGAGCATCTTTCACAACATCGGATGGTACAGAGTTGTGTTAGATGAAGCACACACTATCAAGTGTTCAAAAACTCTCGTCGCCCAATCAGTGTTCACACTAACATCACTCTGCAGATGGTGTCTTACTGGCACTCCTATTCAGAATAATTTGGATGATCTATACAGCCTACTTTGCTTTCTGCATGTGCAACCATGGTGCAACAGGTCTTGGTGGCAAAAGTTGATTCGAAATCCATATGAAAATGGCGATGTAAGAGTACTAAGTTTAGTTAAGTCCATCCTGCGGCCATTAATGCTGCGGAGAACAAAGGAGACAAAAGACAAAGATGGAAGGCCTATTCTCGTTCTCCCACCAGCTCAGGCTCAAATAGTCGAGTGCGAGCAATCCAAGGAAGAGCGCGACTACTACGAAGCCCTCTTCTGGAAATCAAAGATCAAGTTCGATCAGTTCGTTGAGGAAGGCAAAGTTCTTCACAACTACGCATCGATCTTGGAGCTTCTCCTTAGATTAAGGCAGTGCTGCAACCATCCTTATCTTGTCATAAGCCGAGGAAGCAACCAACAGTGTACCGACCTCAGCAATCTCGCTCAGCGGTTCCTCGAGAACTACCGACGCAACAATGGAGAATCAAGGCCGTGCCCTTCTCCTGCGCTAGCTTTCGTCGAAGAAGTGGTGGAGGGAATCAAACGGGGAGAAGTCAGCGAGTGCCCGATCTGCCTTGAATCGGCTTCCGATGATCCGGTACTCACGCCGTGTGCTCACCGGATGTGCCGCGAGTGCCTGCTTTCAAGCTGGAGAACCCCTTCCGCCGGTCCGTGCCCCATCTGCCGAAGGGCGCTCACAAAGGCCGACCTCATTGCCTGCCCCATCCAAAGCCCATTTGAGGTCGATATACGCAAGAATTGGAAGGAGTCATCCAAGGTGCGGGAGCTCATCAATTGCCTGGAGGAGATCAAGCGGTCGGGTGCGGGGGAGAAAAGCATTGTGTTCAGCCAGTGGACCTCATTCCTCGACCTCCTCGAGATCTGCTTCAGCAGGAAAGGAATTCGGTTCCTGAGGTTTGATGGAAAGCTAGCGCAGAAGAGCAGGGAATGGGTATTGAAGGAGTTTGGTGAGACCAATGAAAAGGAGGTTTTGCTGATGTCCCTTAAAGCAGGAGGTGTTGGGCTAAACTTAACTGCAGCTTCCAATGTCTTTCTCATGGATCCTTGGTGGAATCCAGCAGTGGAAGAACAAGCCATTATGAGGATCCATCGCATAGGGCAGAAGAGGCAGGTGAAAGTAAGGAGGTTTATTGTGAAGGATTCTGTGGAAGATAGAATGCGGCAAGTGCACGCGAGGAAGCAAAGGATGATTACTGGAGCTCTCACTGATGAGGAAGTGAGGAGTGCTCGGATTGAAGAGCTGAAGATGCTCTTTAGATAG

Network for GWHGAAEX002997

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08797.10	HIRAN	183	288	1.00E-13
PF00176.22	SNF2_N	414	778	4.30E-82
PF13920.5	zf-C3HC4_3	832	879	7.40E-09
PF00271.30	Helicase_C	908	1019	9.40E-17

Protein Sequence

>GWHPAAEX002997
MGFQTSPEPRVLLAGEIFRIRTILGGEIPESDILQALALAGNNTHRAINVLLESPRPSSKKEEPVAVSYADPISEPEQEVQKEELESPLTITEVALKKFEEDLNIDQKEGSQEKNEMSEESGDNFSMLTAHFSPYINARRIRAVPPNSLLGPDSDRRLQVVSKNPDLVEMGEFLEEPDWFLVGRSYVMGLATTRGWGKLESNEIVYFNFPKIIEGKSNGKRWVSSKAAAATSEIVRFSTKRSGEIGRLPPEWSQCLIPLVHSAKVKVRGRCVSTPEELSLMKEITLYVSFYIHSSVFTEGGESSWKLETTTDNSALHPLRNLFILLKMKPFKQANFTPEELHSRKRSLDIKNQGCKQLEGLAKRRKGDATYIQQGDDDQAISEASLNKLVGTAEVNSLLEAEPPCSLLSDLWPYQKQALYWMSELEKGINAEQAARTLHPCWSAYNICDKRASAVYVNVFSGETTTQFPSATQMARGGILADAMGLGKTVMTIALILANPNRAVLDKDDTNGKALNETERSLKRSSPNVKGGTLIVCPMALLGQWKDELEAHSIPGSVSVFVYYGGEKSNVFREISKHHVVLTTYGVLTSAYKAGSEKSIFHNIGWYRVVLDEAHTIKCSKTLVAQSVFTLTSLCRWCLTGTPIQNNLDDLYSLLCFLHVQPWCNRSWWQKLIRNPYENGDVRVLSLVKSILRPLMLRRTKETKDKDGRPILVLPPAQAQIVECEQSKEERDYYEALFWKSKIKFDQFVEEGKVLHNYASILELLLRLRQCCNHPYLVISRGSNQQCTDLSNLAQRFLENYRRNNGESRPCPSPALAFVEEVVEGIKRGEVSECPICLESASDDPVLTPCAHRMCRECLLSSWRTPSAGPCPICRRALTKADLIACPIQSPFEVDIRKNWKESSKVRELINCLEEIKRSGAGEKSIVFSQWTSFLDLLEICFSRKGIRFLRFDGKLAQKSREWVLKEFGETNEKEVLLMSLKAGGVGLNLTAASNVFLMDPWWNPAVEEQAIMRIHRIGQKRQVKVRRFIVKDSVEDRMRQVHARKQRMITGALTDEEVRSARIEELKMLFR

Gene family

Gene family	subfamily
Transcription Factors Family	SNF2
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding
GO:0016818	Molecular Function	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0005524	Molecular Function	ATP binding
GO:0008270	Molecular Function	zinc ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.890
SRP064423	SRR2545915	Juvenile tuber	0.790
SRP108465	SRR5643513	five period of Gastrodia elata	2.020
	SRR5643514	five period of Gastrodia elata	1.660
	SRR5643515	five period of Gastrodia elata	1.660
	SRR5643524	five period of Gastrodia elata	1.480
	SRR5643525	five period of Gastrodia elata	0.790
	SRR5643528	five period of Gastrodia elata	0.790
	SRR5643658	five period of Gastrodia elata	0.740
	SRR5643659	five period of Gastrodia elata	1.410
	SRR5643660	five period of Gastrodia elata	1.490
	SRR5643661	five period of Gastrodia elata	0.930
	SRR5643662	five period of Gastrodia elata	0.880
	SRR5643663	five period of Gastrodia elata	0.740
	SRR5643664	five period of Gastrodia elata	0.750
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	2.130
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.410
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	2.550
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.100
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	2.570
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.590
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	2.150
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	2.820
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.740
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	2.400
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	2.610
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	2.610
SRP279888	Gastro	Gastrodia elata tuber	0.48
	Juven	Juvenile tuber	1.90
	Mother_Gastro	Mother tuber of Gastrodia elata	0.58
	Mother_Juven	Mother tuber of Juvenile	0.58