Detail information of GWHGAAEX002999/evm.TU.scaffold_129.54
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|294506378|ref|YP_003570436.1| | 3.00E-13 | histidine kinase-response regulator hybrid protein [Salinibacter ruber M8] |
| KOG | KOG0519 | 7.00E-32 | Sensory transduction histidine kinase |
| nr | gi|672162957|ref|XP_008801307.1| | 1.28E-42 | PREDICTED: protein EIN4-like isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q9ZTP3|EIN4_ARATH | 2.00E-32 | Protein EIN4 |
| trEMBL | tr|M0RNP4|M0RNP4_MUSAM | 5.00E-41 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P02140_001} |
| TAIR | AT3G04580 | 7.00E-32 | Signal transduction histidine kinase, hybrid-type, ethylene sensor |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000132 | 1414732 | 1458770 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002999
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00072.23 | Response_reg | 35 | 131 | 7.90E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Others |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14509 | ETR, ERS | MAPK signaling pathway - plant | map04016 |
| Plant hormone signal transduction | map04075 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0000160 | Biological Process | phosphorelay signal transduction system |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.230 |
| SRR2545915 | Juvenile tuber | 1.760 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.840 |
| SRR5643514 | five period of Gastrodia elata | 0.990 | |
| SRR5643515 | five period of Gastrodia elata | 0.330 | |
| SRR5643524 | five period of Gastrodia elata | 1.770 | |
| SRR5643525 | five period of Gastrodia elata | 0.480 | |
| SRR5643528 | five period of Gastrodia elata | 1.090 | |
| SRR5643658 | five period of Gastrodia elata | 1.460 | |
| SRR5643659 | five period of Gastrodia elata | 1.070 | |
| SRR5643660 | five period of Gastrodia elata | 1.490 | |
| SRR5643661 | five period of Gastrodia elata | 0.970 | |
| SRR5643662 | five period of Gastrodia elata | 0.640 | |
| SRR5643663 | five period of Gastrodia elata | 1.710 | |
| SRR5643664 | five period of Gastrodia elata | 1.680 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.700 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.910 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.120 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 4.400 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 4.960 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.980 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.580 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.780 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.680 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.860 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.610 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.610 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.35 |
| Juven | Juvenile tuber | 1.17 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.67 | |
| Mother_Juven | Mother tuber of Juvenile | 0.74 |