Detail information of GWHGAAEX003000/evm.TU.scaffold_129.55
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|440681237|ref|YP_007156032.1| | 3.00E-17 | GAF sensor hybrid histidine kinase [Anabaena cylindrica PCC 7122] |
| KOG | KOG0519 | 2.00E-74 | Sensory transduction histidine kinase |
| nr | gi|695070264|ref|XP_009382152.1| | 1.71E-115 | PREDICTED: protein EIN4-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q0WPQ2|ETR2_ARATH | 5.00E-75 | Ethylene receptor 2 |
| trEMBL | tr|M0RNP4|M0RNP4_MUSAM | 6.00E-116 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P02140_001} |
| TAIR | AT3G23150 | 2.00E-74 | Signal transduction histidine kinase, hybrid-type, ethylene sensor |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000132 | 1467359 | 1469792 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003000
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14509 | ETR, ERS | MAPK signaling pathway - plant | map04016 |
| Plant hormone signal transduction | map04075 |
Gene Ontology
| GO term | Ontology | Name |
|---|
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.540 |
| SRR2545915 | Juvenile tuber | 3.210 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.600 |
| SRR5643514 | five period of Gastrodia elata | 1.600 | |
| SRR5643515 | five period of Gastrodia elata | 1.460 | |
| SRR5643524 | five period of Gastrodia elata | 1.610 | |
| SRR5643525 | five period of Gastrodia elata | 1.900 | |
| SRR5643528 | five period of Gastrodia elata | 1.420 | |
| SRR5643658 | five period of Gastrodia elata | 1.510 | |
| SRR5643659 | five period of Gastrodia elata | 2.710 | |
| SRR5643660 | five period of Gastrodia elata | 2.280 | |
| SRR5643661 | five period of Gastrodia elata | 1.650 | |
| SRR5643662 | five period of Gastrodia elata | 1.800 | |
| SRR5643663 | five period of Gastrodia elata | 2.250 | |
| SRR5643664 | five period of Gastrodia elata | 2.050 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.470 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 4.290 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 10.640 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.360 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 10.500 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 12.390 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.800 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.930 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.830 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 13.730 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 6.450 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 6.450 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 5.65 |
| Juven | Juvenile tuber | 4.19 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 4.41 | |
| Mother_Juven | Mother tuber of Juvenile | 2.06 |