Detail information of GWHGAAEX003001/evm.TU.scaffold_129.56
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|297621203|ref|YP_003709340.1| | 1.00E-19 | serine/threonine PP2C protein phosphatase [Waddlia chondrophila WSU 86-1044] |
| KOG | KOG0698 | 2.00E-93 | Serine/threonine protein phosphatase |
| nr | gi|743825778|ref|XP_010933108.1| | 1.38E-133 | PREDICTED: probable protein phosphatase 2C 75 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q9ZW21|P2C24_ARATH | 5.00E-94 | Probable protein phosphatase 2C 24 |
| trEMBL | tr|M0TQE0|M0TQE0_MUSAM | 2.00E-119 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P14370_001} |
| TAIR | AT2G29380 | 2.00E-93 | highly ABA-induced PP2C gene 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000132 | 1471702 | 1489773 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003001
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00481.20 | PP2C | 88 | 378 | 8.20E-57 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14497 | PP2C | MAPK signaling pathway - plant | map04016 |
| Plant hormone signal transduction | map04075 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0043169 | Molecular Function | cation binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 2.440 |
| SRR2545915 | Juvenile tuber | 8.890 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 0.770 |
| SRR5643514 | five period of Gastrodia elata | 0.930 | |
| SRR5643515 | five period of Gastrodia elata | 0.830 | |
| SRR5643524 | five period of Gastrodia elata | 0.490 | |
| SRR5643525 | five period of Gastrodia elata | 10.720 | |
| SRR5643528 | five period of Gastrodia elata | 15.920 | |
| SRR5643658 | five period of Gastrodia elata | 55.620 | |
| SRR5643659 | five period of Gastrodia elata | 0.870 | |
| SRR5643660 | five period of Gastrodia elata | 1.260 | |
| SRR5643661 | five period of Gastrodia elata | 2.200 | |
| SRR5643662 | five period of Gastrodia elata | 0.420 | |
| SRR5643663 | five period of Gastrodia elata | 0.320 | |
| SRR5643664 | five period of Gastrodia elata | 1.220 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 0.460 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.470 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.060 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 0.660 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 0.890 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.700 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.780 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.600 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 1.720 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.890 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 1.320 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 1.320 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 4.68 |
| Juven | Juvenile tuber | 1.90 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 5.64 | |
| Mother_Juven | Mother tuber of Juvenile | 2.53 |