Detail information of GWHGAAEX003004/evm.TU.scaffold_129.60
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|57640118|ref|YP_182596.1| | 6.00E-66 | fibrillarin [Thermococcus kodakarensis KOD1] |
| KOG | KOG1596 | 2.00E-159 | Fibrillarin and related nucleolar RNA-binding proteins |
| nr | gi|743825879|ref|XP_010933131.1| | 8.53E-168 | PREDICTED: mediator of RNA polymerase II transcription subunit 36a-like [Elaeis guineensis] |
| Swissprot | tr|Q94AH9|MD36A_ARATH | 5.00E-160 | Mediator of RNA polymerase II transcription subunit 36a |
| trEMBL | tr|I1GVX9|I1GVX9_BRADI | 8.00E-165 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI1G32010.1} |
| TAIR | AT4G25630 | 2.00E-159 | fibrillarin 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000132 | 1605192 | 1614231 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003004
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01269.16 | Fibrillarin | 74 | 301 | 2.50E-108 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14563 | NOP1, FBL | Ribosome biogenesis in eukaryotes | map03008 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006364 | Biological Process | rRNA processing |
| GO:0008168 | Molecular Function | methyltransferase activity |
| GO:0003723 | Molecular Function | RNA binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 112.190 |
| SRR2545915 | Juvenile tuber | 116.470 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 214.190 |
| SRR5643514 | five period of Gastrodia elata | 215.520 | |
| SRR5643515 | five period of Gastrodia elata | 181.110 | |
| SRR5643524 | five period of Gastrodia elata | 199.710 | |
| SRR5643525 | five period of Gastrodia elata | 72.000 | |
| SRR5643528 | five period of Gastrodia elata | 72.370 | |
| SRR5643658 | five period of Gastrodia elata | 52.320 | |
| SRR5643659 | five period of Gastrodia elata | 292.230 | |
| SRR5643660 | five period of Gastrodia elata | 243.860 | |
| SRR5643661 | five period of Gastrodia elata | 306.920 | |
| SRR5643662 | five period of Gastrodia elata | 286.220 | |
| SRR5643663 | five period of Gastrodia elata | 257.030 | |
| SRR5643664 | five period of Gastrodia elata | 261.220 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 195.700 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 264.410 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 226.430 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 200.530 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 145.350 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 139.960 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 209.140 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 159.950 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 208.140 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 201.220 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 224.580 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 224.580 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 278.45 |
| Juven | Juvenile tuber | 387.08 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 53.07 | |
| Mother_Juven | Mother tuber of Juvenile | 143.07 |