Detail information of GWHGAAEX003015/evm.TU.scaffold_129.71
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428312043|ref|YP_007123020.1| | 2.00E-90 | glutamine synthetase [Microcoleus sp. PCC 7113] |
| KOG | KOG0683 | 0 | Glutamine synthetase |
| nr | gi|672129630|ref|XP_008788326.1| | 0 | PREDICTED: protein fluG [Phoenix dactylifera] |
| trEMBL | tr|D7TIU8|D7TIU8_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CBI30174.3} |
| TAIR | AT3G53180 | 0 | glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000132 | 1809184 | 1941663 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003015
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04909.13 | Amidohydro_2 | 50 | 210 | 3.90E-15 |
| PF16952.4 | Gln-synt_N_2 | 235 | 324 | 4.90E-10 |
| PF00120.23 | Gln-synt_C | 334 | 667 | 4.20E-88 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006807 | Biological Process | nitrogen compound metabolic process |
| GO:0006542 | Biological Process | glutamine biosynthetic process |
| GO:0003824 | Molecular Function | catalytic activity |
| GO:0016787 | Molecular Function | hydrolase activity |
| GO:0004356 | Molecular Function | glutamate-ammonia ligase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 63.710 |
| SRR2545915 | Juvenile tuber | 48.240 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 100.160 |
| SRR5643514 | five period of Gastrodia elata | 106.390 | |
| SRR5643515 | five period of Gastrodia elata | 118.900 | |
| SRR5643524 | five period of Gastrodia elata | 164.060 | |
| SRR5643525 | five period of Gastrodia elata | 19.610 | |
| SRR5643528 | five period of Gastrodia elata | 33.840 | |
| SRR5643658 | five period of Gastrodia elata | 15.000 | |
| SRR5643659 | five period of Gastrodia elata | 53.810 | |
| SRR5643660 | five period of Gastrodia elata | 57.270 | |
| SRR5643661 | five period of Gastrodia elata | 99.570 | |
| SRR5643662 | five period of Gastrodia elata | 18.220 | |
| SRR5643663 | five period of Gastrodia elata | 72.100 | |
| SRR5643664 | five period of Gastrodia elata | 14.660 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 57.550 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 77.010 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 64.480 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 42.330 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 44.610 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 58.470 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 57.420 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 43.970 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 108.110 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 110.040 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 114.130 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 114.130 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 15.99 |
| Juven | Juvenile tuber | 30.22 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 68.33 | |
| Mother_Juven | Mother tuber of Juvenile | 86.55 |