Detail information of GWHGAAEX003016/evm.TU.scaffold_129.72
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 1.00E-144 | FOG: PPR repeat |
| nr | gi|743772965|ref|XP_010916806.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At4g01570 [Elaeis guineensis] |
| Swissprot | tr|Q9ZUA2|PP141_ARATH | 3.00E-145 | Pentatricopeptide repeat-containing protein At2g01740 |
| trEMBL | tr|W9R0T6|W9R0T6_9ROSA | 5.00E-156 | Uncharacterized protein {ECO:0000313|EMBL:EXB32333.1} |
| trEMBL | tr|W9R0T6|W9R0T6_9ROSA | 3.00E-26 | Uncharacterized protein {ECO:0000313|EMBL:EXB32333.1} |
| TAIR | AT2G01740 | 1.00E-144 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000132 | 1949440 | 1951497 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003016
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12854.6 | PPR_1 | 86 | 111 | 7.80E-08 |
| PF12854.6 | PPR_1 | 158 | 187 | 2.40E-07 |
| PF13041.5 | PPR_2 | 194 | 243 | 2.70E-15 |
| PF01535.19 | PPR | 267 | 294 | 0.00024 |
| PF12854.6 | PPR_1 | 296 | 328 | 1.90E-08 |
| PF13041.5 | PPR_2 | 334 | 383 | 1.00E-08 |
| PF13041.5 | PPR_2 | 401 | 449 | 1.90E-12 |
| PF13041.5 | PPR_2 | 471 | 518 | 3.60E-10 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 7.020 |
| SRR2545915 | Juvenile tuber | 3.420 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 2.900 |
| SRR5643514 | five period of Gastrodia elata | 2.670 | |
| SRR5643515 | five period of Gastrodia elata | 2.950 | |
| SRR5643524 | five period of Gastrodia elata | 2.380 | |
| SRR5643525 | five period of Gastrodia elata | 1.900 | |
| SRR5643528 | five period of Gastrodia elata | 1.000 | |
| SRR5643658 | five period of Gastrodia elata | 1.590 | |
| SRR5643659 | five period of Gastrodia elata | 2.910 | |
| SRR5643660 | five period of Gastrodia elata | 2.820 | |
| SRR5643661 | five period of Gastrodia elata | 2.420 | |
| SRR5643662 | five period of Gastrodia elata | 2.710 | |
| SRR5643663 | five period of Gastrodia elata | 2.520 | |
| SRR5643664 | five period of Gastrodia elata | 2.270 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.380 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.250 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.200 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.380 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 9.390 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 12.720 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 8.330 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 7.310 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.370 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 4.470 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.950 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.950 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.83 |
| Juven | Juvenile tuber | 6.85 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 3.11 | |
| Mother_Juven | Mother tuber of Juvenile | 6.06 |