Detail information of GWHGAAEX003017/evm.TU.scaffold_129.73
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428206801|ref|YP_007091154.1| | 3.00E-86 | glutamate--ammonia ligase [Chroococcidiopsis thermalis PCC 7203] |
| KOG | KOG0683 | 0 | Glutamine synthetase |
| nr | gi|672129630|ref|XP_008788326.1| | 0 | PREDICTED: protein fluG [Phoenix dactylifera] |
| trEMBL | tr|I1I4E5|I1I4E5_BRADI | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:BRADI3G27877.1} |
| TAIR | AT3G53180 | 0 | glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000132 | 1961496 | 2035039 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003017
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module7 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04909.13 | Amidohydro_2 | 225 | 382 | 5.50E-07 |
| PF00120.23 | Gln-synt_C | 506 | 834 | 2.70E-83 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006542 | Biological Process | glutamine biosynthetic process |
| GO:0006807 | Biological Process | nitrogen compound metabolic process |
| GO:0004356 | Molecular Function | glutamate-ammonia ligase activity |
| GO:0016787 | Molecular Function | hydrolase activity |
| GO:0003824 | Molecular Function | catalytic activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 66.440 |
| SRR2545915 | Juvenile tuber | 36.400 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 57.500 |
| SRR5643514 | five period of Gastrodia elata | 38.710 | |
| SRR5643515 | five period of Gastrodia elata | 47.820 | |
| SRR5643524 | five period of Gastrodia elata | 36.170 | |
| SRR5643525 | five period of Gastrodia elata | 4.020 | |
| SRR5643528 | five period of Gastrodia elata | 3.020 | |
| SRR5643658 | five period of Gastrodia elata | 3.190 | |
| SRR5643659 | five period of Gastrodia elata | 35.970 | |
| SRR5643660 | five period of Gastrodia elata | 27.940 | |
| SRR5643661 | five period of Gastrodia elata | 57.580 | |
| SRR5643662 | five period of Gastrodia elata | 16.240 | |
| SRR5643663 | five period of Gastrodia elata | 18.470 | |
| SRR5643664 | five period of Gastrodia elata | 14.180 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 91.980 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 123.520 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 72.730 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 93.820 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 92.610 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 101.020 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 75.860 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 73.030 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 62.200 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 73.380 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 74.350 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 74.350 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 23.34 |
| Juven | Juvenile tuber | 206.81 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 100.34 | |
| Mother_Juven | Mother tuber of Juvenile | 121.20 |