Detail information of GWHGAAEX003019/evm.TU.scaffold_129.75
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|374995433|ref|YP_004970932.1| | 2.00E-78 | theronine dehydrogenase-like Zn-dependent dehydrogenase [Desulfosporosinus orientis DSM 765] |
| KOG | KOG0024 | 3.00E-168 | Sorbitol dehydrogenase |
| nr | gi|719998935|ref|XP_010255557.1| | 2.78E-173 | PREDICTED: sorbitol dehydrogenase [Nelumbo nucifera] |
| Swissprot | tr|Q9FJ95|DHSO_ARATH | 9.00E-169 | Sorbitol dehydrogenase |
| trEMBL | tr|C6TD70|C6TD70_SOYBN | 2.00E-173 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G27310.1} |
| TAIR | AT5G51970 | 3.00E-168 | GroES-like zinc-binding alcohol dehydrogenase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000132 | 2132362 | 2136296 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003019
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08240.11 | ADH_N | 34 | 145 | 1.10E-33 |
| PF00107.25 | ADH_zinc_N | 186 | 318 | 1.60E-21 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00008 | SORD, gutB | Metabolic pathways | map01100 |
| Pentose and glucuronate interconversions | map00040 | ||
| Fructose and mannose metabolism | map00051 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5018.870 |
| SRR2545915 | Juvenile tuber | 18676.200 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 19541.600 |
| SRR5643514 | five period of Gastrodia elata | 34149.000 | |
| SRR5643515 | five period of Gastrodia elata | 27707.800 | |
| SRR5643524 | five period of Gastrodia elata | 30584.200 | |
| SRR5643525 | five period of Gastrodia elata | 1447.630 | |
| SRR5643528 | five period of Gastrodia elata | 1286.910 | |
| SRR5643658 | five period of Gastrodia elata | 1268.100 | |
| SRR5643659 | five period of Gastrodia elata | 10560.900 | |
| SRR5643660 | five period of Gastrodia elata | 12417.300 | |
| SRR5643661 | five period of Gastrodia elata | 14557.400 | |
| SRR5643662 | five period of Gastrodia elata | 18735.000 | |
| SRR5643663 | five period of Gastrodia elata | 20396.300 | |
| SRR5643664 | five period of Gastrodia elata | 17517.700 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11049.300 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 8351.660 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 10771.300 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6534.340 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 12544.800 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 11037.800 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12898.300 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6448.860 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 33883.500 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 30333.200 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 17957.200 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 17957.200 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 16,196.77 |
| Juven | Juvenile tuber | 9,269.74 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 12,689.46 | |
| Mother_Juven | Mother tuber of Juvenile | 7,207.64 |