Detail information of GWHGAAEX003020/evm.TU.scaffold_129.76
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|379735738|ref|YP_005329244.1| | 7.00E-19 | Multicopper oxidase, type 3 [Blastococcus saxobsidens DD2] |
| KOG | KOG1263 | 1.00E-138 | Multicopper oxidases |
| nr | gi|672115268|ref|XP_008780211.1| | 0 | PREDICTED: monocopper oxidase-like protein SKU5 [Phoenix dactylifera] |
| Swissprot | tr|Q9SU40|SKU5_ARATH | 3.00E-128 | Monocopper oxidase-like protein SKU5 (Precursor) |
| trEMBL | tr|M5X473|M5X473_PRUPE | 0 | Uncharacterized protein {ECO:0000313|EMBL:EMJ20724.1} |
| TAIR | AT1G21850 | 1.00E-138 | SKU5 similar 8 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000132 | 2150332 | 2157964 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003020
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07732.14 | Cu-oxidase_3 | 67 | 174 | 6.80E-36 |
| PF00394.21 | Cu-oxidase | 219 | 336 | 3.10E-31 |
| PF07731.13 | Cu-oxidase_2 | 448 | 551 | 1.20E-24 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0005507 | Molecular Function | copper ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 20.840 |
| SRR2545915 | Juvenile tuber | 3.210 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 50.030 |
| SRR5643514 | five period of Gastrodia elata | 33.970 | |
| SRR5643515 | five period of Gastrodia elata | 80.070 | |
| SRR5643524 | five period of Gastrodia elata | 61.740 | |
| SRR5643525 | five period of Gastrodia elata | 90.760 | |
| SRR5643528 | five period of Gastrodia elata | 95.530 | |
| SRR5643658 | five period of Gastrodia elata | 62.950 | |
| SRR5643659 | five period of Gastrodia elata | 4.690 | |
| SRR5643660 | five period of Gastrodia elata | 2.500 | |
| SRR5643661 | five period of Gastrodia elata | 5.270 | |
| SRR5643662 | five period of Gastrodia elata | 4.420 | |
| SRR5643663 | five period of Gastrodia elata | 3.400 | |
| SRR5643664 | five period of Gastrodia elata | 2.890 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 78.920 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 104.330 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 66.000 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 32.950 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 42.610 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 46.690 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 24.900 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 31.310 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 37.590 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 41.590 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 159.560 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 159.560 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.65 |
| Juven | Juvenile tuber | 3.18 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1,214.45 | |
| Mother_Juven | Mother tuber of Juvenile | 886.12 |