Detail information of GWHGAAEX003024/evm.TU.scaffold_129.80
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|163854545|ref|YP_001628843.1| | 6.00E-21 | hypothetical protein Bpet0241 [Bordetella petrii DSM 12804] |
| nr | gi|743834982|ref|XP_010935685.1| | 0 | PREDICTED: probable pectate lyase 8 isoform X1 [Elaeis guineensis] |
| Swissprot | tr|Q944R1|PLY15_ARATH | 0 | Probable pectate lyase 15 (Precursor) |
| trEMBL | tr|D7TS74|D7TS74_VITVI | 0 | Pectate lyase {ECO:0000256|RuleBase:RU361123} |
| TAIR | AT1G04680 | 0 | Pectin lyase-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000132 | 2276460 | 2281751 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003024
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00544.18 | Pec_lyase_C | 183 | 330 | 3.30E-14 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | PL1 |
| Carbohydrate-Active enzymes Family | PL1 |
| Carbohydrate-Active enzymes Family | PL1 |
| Carbohydrate-Active enzymes Family | PL1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01728 | pel | Metabolic pathways | map01100 |
| Pentose and glucuronate interconversions | map00040 | ||
| Quorum sensing | map02024 |
Gene Ontology
| GO term | Ontology | Name |
|---|
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.760 |
| SRR2545915 | Juvenile tuber | 2.660 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.660 |
| SRR5643514 | five period of Gastrodia elata | 5.520 | |
| SRR5643515 | five period of Gastrodia elata | 4.350 | |
| SRR5643524 | five period of Gastrodia elata | 3.580 | |
| SRR5643525 | five period of Gastrodia elata | 19.350 | |
| SRR5643528 | five period of Gastrodia elata | 7.530 | |
| SRR5643658 | five period of Gastrodia elata | 18.440 | |
| SRR5643659 | five period of Gastrodia elata | 1.730 | |
| SRR5643660 | five period of Gastrodia elata | 1.590 | |
| SRR5643661 | five period of Gastrodia elata | 1.140 | |
| SRR5643662 | five period of Gastrodia elata | 1.760 | |
| SRR5643663 | five period of Gastrodia elata | 3.780 | |
| SRR5643664 | five period of Gastrodia elata | 3.490 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 15.180 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.410 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.350 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.930 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.560 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 13.360 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.470 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 18.500 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.440 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.080 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.700 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.700 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.18 |
| Juven | Juvenile tuber | 2.50 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.07 | |
| Mother_Juven | Mother tuber of Juvenile | 4.08 |