Gene detail

Detail information of GWHGAAEX003025/evm.TU.scaffold_129.82

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4546	1.00E-96	Peroxisomal biogenesis protein (peroxin 16)
nr	gi\|743875818\|ref\|XP_010907422.1\|	1.81E-158	PREDICTED: peroxisome biogenesis protein 16 isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q8S8S1\|PEX16_ARATH	1.00E-110	Peroxisome biogenesis protein 16
trEMBL	tr\|M0TWF3\|M0TWF3_MUSAM	1.00E-140	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr9P00960_001}
TAIR	AT2G45690	1.00E-96	shrunken seed protein (SSE1)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000132	2304340	2307388	-

Transcript Sequence
>GWHTAAEX003025 GTGAAGGTGAATATTAACGAACCCATCTTGCCCGTCACTTTTCTTCCTCTTTTCAGTCTTTCACATGTAATCTTGATTGGGCATGTAAGCAGCGCCGATCGGTTCTTCTCCTCCTCTCCGTTCAAACTCTACCTTTCGACACACCTCTTCTCCATTGGCTCTTCCATAGCCGCACCCAATCGGTTTGTAAGAATCATTTCCTTTGCAGCGAAGACCCTATCACCGGCAAGAAGGGGGCTGTGTTGTCCATAACCTTCGAATCCGAAGCCTGAATGCCTTCGAGCTTCAAACGGAGAAAGGGCACCGACGCAAGCCTTATCTCTGTCATCTCCTAGGCGTACCTCATATCGCTAACGGGGACATCGTTTGCAAAGAGCTCTCCTCCGCTGGCCGTTTACTGTTCAGAGGCTGTTTGCTATATATATTCTGCAATTAAGGTATTATATCAAGCTGAACACGAAAGATAGAATTTGTGCATTCTCTCAGTTGATCACGAGAAGATTTCGAAGTTATTGGAGAAGCCATGGAAGGCTACAAATTTTGGGTGCGGAAGAACAGGGAATTCGTGCACTCTTTGGAATCCCTTGCAAACGGAATGACGTGGCTTCTCCCGGAGCGCTTCTCCAATAGCGAGATAGGCCCTGAAGCAGTATATGCTTTCTTGGGCATAATCAGTGCTGTGAATCAGCACATAATTGATACATGCTGGATAAAATACCGACCCCCAGGTTCAGAGGAACAAATTCCATGGTCTTTATGCATTTCTGTTCTCAAAGATTTGGAGACTGTAGTTGAAGTTGCTGCAGAGCACTTTTATGGAAAGGAGCTGAAGTGGAACTTTCTTATAATTATGGAGTTGACGAAGGCATTGGTTAGACTGGGTTCATTTCGAGATAGCGGGTATCATATGCTTCTTCAAGGTGGGGCAGTTCCTAATCTCAAAAAGCTTCCCGAAATTCCAGGAGCTCATCTTGGCGGATCTAGAAATCCAGGAATGAGTTATGAGTATTTTGTACCTGGAAAATTACACCATTTGAATGGACAGGTATCTTCAAATATGGAAGAAAGAGCGATGGCAGCCCTGAATAAGTTCGGGGACAAGGCTAGGATTGCATCTGAGCAAAAGTTGTTCAACAGCTCGTATCATATTTCTCAATCACCTGCAACCAATTTCAGAAAGCCAATTCTTTCGTCCATTTTGTCCCAGAAAGGAGTTTATGGCATGGCTTTTGTGACCGGAGAAGTTATCTCTATACTGAGACCACTTATTTATGTTATTTTAATTCGAAAACTTGGAATTCAATCGTGGAAGCCTTGGCTTCTTTCTTTTGGTACTGAACTTGCTGGATTAAGCTTGCTTTTATATGGATCAAGCTCGAGCTCCAGATCTGGTGATAAACTTTATCAACTTTCTATACCAGAGAAAGATGAGATCCAAAGGCGGAAACTGATATGGGCACTGTATATCATGAGGGATCCATTCTTTACTAAGCATACAAAACATCGGGTTATGAAAATTGATGAAGTTCTGAACCGGGTCCCAGTTATTGGATTCCTAACAGGGAAAATTGTTGAGCTGCTAATTGGAGCTCAAACTCGCTACACTTACACATCAGGTTCATAACAGAAGAACCATTGGAATATGACATCTCTTATAGGGTTTTGTTTGATCATTTTCTGGAAGAATCTTGCAACTTGAATTTAAAGGCATTACAAACTGTGTAAATTAATGACTTTGTCCATCCATGTAATTTGATATATATTTATAGAAGTTCTCATTTTAAATGAGCAATTTGCTGAGTCCACCTGTATACATACTACTAAATTACTTTTTGGAGCTGGTTGGTAATCCAGGCTTTAGGATTAACAAGTCCTAAAAACATTTTGGTACACTATGTTGTAAAATATGCTTAATTTTTCATAAACCACAAAACTTAACAAATTCAAGATTTCAAAATTTAGCGATTTTTTTTATTTTT

Network for GWHGAAEX003025

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08610.9	Pex16	4	357	3.00E-66

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13335	PEX16	Peroxisome	map04146

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	51.330
SRP064423	SRR2545915	Juvenile tuber	48.090
SRP108465	SRR5643513	five period of Gastrodia elata	37.670
	SRR5643514	five period of Gastrodia elata	44.760
	SRR5643515	five period of Gastrodia elata	40.850
	SRR5643524	five period of Gastrodia elata	41.550
	SRR5643525	five period of Gastrodia elata	66.480
	SRR5643528	five period of Gastrodia elata	61.620
	SRR5643658	five period of Gastrodia elata	70.540
	SRR5643659	five period of Gastrodia elata	31.530
	SRR5643660	five period of Gastrodia elata	31.560
	SRR5643661	five period of Gastrodia elata	27.930
	SRR5643662	five period of Gastrodia elata	32.410
	SRR5643663	five period of Gastrodia elata	36.990
	SRR5643664	five period of Gastrodia elata	38.650
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	32.890
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	48.250
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	32.690
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	32.330
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	24.020
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	25.800
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	27.170
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	22.590
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	25.730
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	23.300
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	41.390
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	41.390
SRP279888	Gastro	Gastrodia elata tuber	37.57
	Juven	Juvenile tuber	45.21
	Mother_Gastro	Mother tuber of Gastrodia elata	52.20
	Mother_Juven	Mother tuber of Juvenile	57.81