Detail information of GWHGAAEX003027/evm.TU.scaffold_129.85
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|374995433|ref|YP_004970932.1| | 9.00E-94 | theronine dehydrogenase-like Zn-dependent dehydrogenase [Desulfosporosinus orientis DSM 765] |
| KOG | KOG0024 | 0 | Sorbitol dehydrogenase |
| nr | gi|743854483|ref|XP_010940906.1| | 0 | PREDICTED: sorbitol dehydrogenase-like [Elaeis guineensis] |
| Swissprot | tr|Q9FJ95|DHSO_ARATH | 0 | Sorbitol dehydrogenase |
| trEMBL | tr|M0SQC7|M0SQC7_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P19640_001} |
| TAIR | AT5G51970 | 0 | GroES-like zinc-binding alcohol dehydrogenase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000132 | 2328519 | 2352268 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003027
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module5 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08240.11 | ADH_N | 22 | 133 | 9.20E-32 |
| PF00107.25 | ADH_zinc_N | 173 | 304 | 6.80E-20 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00008 | SORD, gutB | Metabolic pathways | map01100 |
| Pentose and glucuronate interconversions | map00040 | ||
| Fructose and mannose metabolism | map00051 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0016491 | Molecular Function | oxidoreductase activity |
| GO:0008270 | Molecular Function | zinc ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 63.990 |
| SRR2545915 | Juvenile tuber | 73.760 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 310.390 |
| SRR5643514 | five period of Gastrodia elata | 656.220 | |
| SRR5643515 | five period of Gastrodia elata | 403.770 | |
| SRR5643524 | five period of Gastrodia elata | 522.170 | |
| SRR5643525 | five period of Gastrodia elata | 36.140 | |
| SRR5643528 | five period of Gastrodia elata | 33.560 | |
| SRR5643658 | five period of Gastrodia elata | 25.380 | |
| SRR5643659 | five period of Gastrodia elata | 36.920 | |
| SRR5643660 | five period of Gastrodia elata | 25.220 | |
| SRR5643661 | five period of Gastrodia elata | 35.840 | |
| SRR5643662 | five period of Gastrodia elata | 44.320 | |
| SRR5643663 | five period of Gastrodia elata | 64.700 | |
| SRR5643664 | five period of Gastrodia elata | 44.330 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 312.290 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 488.030 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 401.440 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 193.010 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 168.470 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 152.520 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 164.650 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 165.800 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 261.750 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 201.910 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 604.150 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 604.150 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 35.83 |
| Juven | Juvenile tuber | 236.75 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 26.89 | |
| Mother_Juven | Mother tuber of Juvenile | 127.50 |