Detail information of GWHGAAEX003030/evm.TU.scaffold_129.90


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|392383002|ref|YP_005032199.1|8.00E-1630S ribosomal subunit protein S17 [Azospirillum brasilense Sp245]
KOGKOG17402.00E-35Predicted mitochondrial/chloroplast ribosomal protein S17
nrgi|672158899|ref|XP_008799195.1|7.11E-37PREDICTED: 30S ribosomal protein S17, chloroplastic [Phoenix dactylifera]
Swissprottr|P16180|RR17_ARATH5.00E-3630S ribosomal protein S17, chloroplastic (Precursor)
trEMBLtr|A0A0A0K952|A0A0A0K952_CUCSA3.00E-36Uncharacterized protein {ECO:0000313|EMBL:KGN45384.1}
TAIRAT1G798502.00E-35ribosomal protein S17

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000013224004772401409+
Transcript Sequence

Network for GWHGAAEX003030

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00366.19Ribosomal_S17521154.10E-23
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02961RP-S17, MRPS17, rpsQ Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms10.110
SRR2545915Juvenile tuber12.630
SRP108465SRR5643513five period of Gastrodia elata22.370
SRR5643514five period of Gastrodia elata26.010
SRR5643515five period of Gastrodia elata27.720
SRR5643524five period of Gastrodia elata20.480
SRR5643525five period of Gastrodia elata10.580
SRR5643528five period of Gastrodia elata6.980
SRR5643658five period of Gastrodia elata5.780
SRR5643659five period of Gastrodia elata27.140
SRR5643660five period of Gastrodia elata21.320
SRR5643661five period of Gastrodia elata30.940
SRR5643662five period of Gastrodia elata27.920
SRR5643663five period of Gastrodia elata21.210
SRR5643664five period of Gastrodia elata28.760
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_123.100
SRR6049655Rhizomagastrodiae_C368-T10_good_151.040
SRR6049656Rhizomagastrodiae_C368-T07_good_121.370
SRR6049657Rhizomagastrodiae_C368-T07_good_117.130
SRR6049658Rhizomagastrodiae_C368-T04_good_110.930
SRR6049659Rhizomagastrodiae_C368-T04_good_19.160
SRR6049660Rhizomagastrodiae_C368-T01_good_117.370
SRR6049661Rhizomagastrodiae_C368-T04_good_114.300
SRR6049662Rhizomagastrodiae_C368-T01_good_123.590
SRR6049663Rhizomagastrodiae_C368-T01_good_118.290
SRR6049664Rhizomagastrodiae_C368-T10_good_130.720
SRR6049665Rhizomagastrodiae_C368-T10_good_130.720
SRP279888GastroGastrodia elata tuber 14.74
JuvenJuvenile tuber18.48
Mother_GastroMother tuber of Gastrodia elata 6.91
Mother_JuvenMother tuber of Juvenile 6.03