Detail information of GWHGAAEX003035/evm.TU.scaffold_129.97
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|328543334|ref|YP_004303443.1| | 5.00E-37 | DNA methylase [Polymorphum gilvum SL003B-26A1] |
| nr | gi|743879185|ref|XP_010908353.1| | 0 | PREDICTED: DNA (cytosine-5)-methyltransferase CMT2-like [Elaeis guineensis] |
| Swissprot | tr|Q94F87|CMT2_ARATH | 0 | DNA (cytosine-5)-methyltransferase CMT2 |
| trEMBL | tr|K3Z383|K3Z383_SETIT | 0 | Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417} |
| TAIR | AT1G69770 | 0 | chromomethylase 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000132 | 2672549 | 2727057 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003035
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01426.17 | BAH | 261 | 372 | 7.40E-12 |
| PF00385.23 | Chromo | 538 | 578 | 1.40E-09 |
| PF00145.16 | DNA_methylase | 588 | 942 | 9.20E-37 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00558 | DNMT1, dcm | Metabolic pathways | map01100 |
| Cysteine and methionine metabolism | map00270 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008168 | Molecular Function | methyltransferase activity |
| GO:0003682 | Molecular Function | chromatin binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.090 |
| SRR2545915 | Juvenile tuber | 8.920 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.120 |
| SRR5643514 | five period of Gastrodia elata | 6.100 | |
| SRR5643515 | five period of Gastrodia elata | 5.670 | |
| SRR5643524 | five period of Gastrodia elata | 5.500 | |
| SRR5643525 | five period of Gastrodia elata | 3.990 | |
| SRR5643528 | five period of Gastrodia elata | 2.820 | |
| SRR5643658 | five period of Gastrodia elata | 3.990 | |
| SRR5643659 | five period of Gastrodia elata | 11.670 | |
| SRR5643660 | five period of Gastrodia elata | 13.110 | |
| SRR5643661 | five period of Gastrodia elata | 11.350 | |
| SRR5643662 | five period of Gastrodia elata | 13.580 | |
| SRR5643663 | five period of Gastrodia elata | 14.580 | |
| SRR5643664 | five period of Gastrodia elata | 14.340 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.610 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.990 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.040 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.660 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.150 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 5.520 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.290 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 8.310 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.180 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.180 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 10.440 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 10.440 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 17.87 |
| Juven | Juvenile tuber | 10.16 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.00 | |
| Mother_Juven | Mother tuber of Juvenile | 9.88 |