Detail information of GWHGAAEX003036/evm.TU.scaffold_129.98
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|124028171|ref|YP_001013491.1| | 3.00E-42 | 50S ribosomal protein L6P [Hyperthermus butylicus DSM 5456] |
| KOG | KOG3255 | 6.00E-104 | 60S ribosomal protein L9 |
| nr | gi|695074600|ref|XP_009384509.1| | 7.79E-117 | PREDICTED: 60S ribosomal protein L9-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|P49210|RL9_ORYSJ | 2.00E-114 | 60S ribosomal protein L9 |
| trEMBL | tr|J3MYM8|J3MYM8_ORYBR | 6.00E-114 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB09G21070.1} |
| TAIR | AT4G10450 | 6.00E-104 | Ribosomal protein L6 family |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000132 | 2774117 | 2780521 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003036
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00347.22 | Ribosomal_L6 | 48 | 122 | 1.70E-14 |
| PF00347.22 | Ribosomal_L6 | 136 | 213 | 6.80E-11 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02940 | RP-L9e, RPL9 | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0019843 | Molecular Function | rRNA binding |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 144.960 |
| SRR2545915 | Juvenile tuber | 227.400 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 179.770 |
| SRR5643514 | five period of Gastrodia elata | 198.020 | |
| SRR5643515 | five period of Gastrodia elata | 180.960 | |
| SRR5643524 | five period of Gastrodia elata | 191.150 | |
| SRR5643525 | five period of Gastrodia elata | 84.990 | |
| SRR5643528 | five period of Gastrodia elata | 118.770 | |
| SRR5643658 | five period of Gastrodia elata | 88.120 | |
| SRR5643659 | five period of Gastrodia elata | 161.350 | |
| SRR5643660 | five period of Gastrodia elata | 151.000 | |
| SRR5643661 | five period of Gastrodia elata | 170.440 | |
| SRR5643662 | five period of Gastrodia elata | 155.720 | |
| SRR5643663 | five period of Gastrodia elata | 144.000 | |
| SRR5643664 | five period of Gastrodia elata | 136.900 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 156.680 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 257.150 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 192.080 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 151.500 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 143.320 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 115.260 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 160.440 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 131.070 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 192.170 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 182.550 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 248.340 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 248.340 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 204.25 |
| Juven | Juvenile tuber | 147.91 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 78.79 | |
| Mother_Juven | Mother tuber of Juvenile | 98.67 |