Detail information of GWHGAAEX003039/evm.TU.scaffold_13.1
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|46447129|ref|YP_008494.1| | 2.00E-11 | hypothetical protein pc1495 [Candidatus Protochlamydia amoebophila UWE25] |
| KOG | KOG1947 | 2.00E-163 | Leucine rich repeat proteins, some proteins contain F-box |
| nr | gi|743784622|ref|XP_010921703.1| | 3.05E-180 | PREDICTED: F-box protein SKP2A-like isoform X3 [Elaeis guineensis] |
| Swissprot | tr|Q9LPL4|SKP2A_ARATH | 7.00E-164 | F-box protein SKP2A |
| trEMBL | tr|K3Z793|K3Z793_SETIT | 4.00E-174 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si022413m} |
| TAIR | AT1G21410 | 2.00E-163 | F-box/RNI-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000007 | 22389 | 30149 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003039
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13516.5 | LRR_6 | 202 | 226 | 0.00079 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K03875 | SKP2, FBXL1 | Ubiquitin mediated proteolysis | map04120 |
| FoxO signaling pathway | map04068 | ||
| mTOR signaling pathway | map04150 | ||
| Cell cycle | map04110 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 64.290 |
| SRR2545915 | Juvenile tuber | 37.560 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 33.170 |
| SRR5643514 | five period of Gastrodia elata | 30.980 | |
| SRR5643515 | five period of Gastrodia elata | 26.820 | |
| SRR5643524 | five period of Gastrodia elata | 22.960 | |
| SRR5643525 | five period of Gastrodia elata | 128.790 | |
| SRR5643528 | five period of Gastrodia elata | 133.060 | |
| SRR5643658 | five period of Gastrodia elata | 143.350 | |
| SRR5643659 | five period of Gastrodia elata | 15.700 | |
| SRR5643660 | five period of Gastrodia elata | 22.590 | |
| SRR5643661 | five period of Gastrodia elata | 15.860 | |
| SRR5643662 | five period of Gastrodia elata | 24.570 | |
| SRR5643663 | five period of Gastrodia elata | 22.770 | |
| SRR5643664 | five period of Gastrodia elata | 43.930 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 46.300 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 44.110 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 32.890 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 55.140 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 70.640 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 82.560 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 50.600 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 59.800 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 32.160 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 39.240 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 44.370 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 44.370 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 66.73 |
| Juven | Juvenile tuber | 40.51 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 117.83 | |
| Mother_Juven | Mother tuber of Juvenile | 96.27 |