Detail information of GWHGAAEX003043/evm.TU.scaffold_13.11


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743800424|ref|XP_010925930.1|0PREDICTED: scarecrow-like protein 1 [Elaeis guineensis]
Swissprottr|Q9SDQ3|SCL1_ARATH0Scarecrow-like protein 1
trEMBLtr|M0SB59|M0SB59_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P02410_001}
TAIRAT1G214500SCARECROW-like 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000007405034429858-
Transcript Sequence

Network for GWHGAAEX003043

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03514.13GRAS2195882.70E-136
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGRAS

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms97.840
SRR2545915Juvenile tuber103.710
SRP108465SRR5643513five period of Gastrodia elata80.790
SRR5643514five period of Gastrodia elata75.280
SRR5643515five period of Gastrodia elata70.350
SRR5643524five period of Gastrodia elata74.460
SRR5643525five period of Gastrodia elata85.440
SRR5643528five period of Gastrodia elata58.830
SRR5643658five period of Gastrodia elata99.240
SRR5643659five period of Gastrodia elata87.260
SRR5643660five period of Gastrodia elata99.620
SRR5643661five period of Gastrodia elata84.250
SRR5643662five period of Gastrodia elata114.350
SRR5643663five period of Gastrodia elata109.160
SRR5643664five period of Gastrodia elata136.280
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1111.540
SRR6049655Rhizomagastrodiae_C368-T10_good_194.580
SRR6049656Rhizomagastrodiae_C368-T07_good_1101.280
SRR6049657Rhizomagastrodiae_C368-T07_good_1139.280
SRR6049658Rhizomagastrodiae_C368-T04_good_183.680
SRR6049659Rhizomagastrodiae_C368-T04_good_1120.720
SRR6049660Rhizomagastrodiae_C368-T01_good_1101.160
SRR6049661Rhizomagastrodiae_C368-T04_good_1103.190
SRR6049662Rhizomagastrodiae_C368-T01_good_186.460
SRR6049663Rhizomagastrodiae_C368-T01_good_191.240
SRR6049664Rhizomagastrodiae_C368-T10_good_187.640
SRR6049665Rhizomagastrodiae_C368-T10_good_187.640
SRP279888GastroGastrodia elata tuber 87.13
JuvenJuvenile tuber102.49
Mother_GastroMother tuber of Gastrodia elata 77.12
Mother_JuvenMother tuber of Juvenile 66.57