Gene detail

Detail information of GWHGAAEX003053/evm.TU.scaffold_13.28

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|514741460\|ref\|XP_004959898.1\|	0	PREDICTED: uncharacterized protein LOC101785333 [Setaria italica]
trEMBL	tr\|M0WVL1\|M0WVL1_HORVD	3.00E-141	Uncharacterized protein {ECO:0000313\|EnsemblPlants:MLOC_55015.1}
trEMBL	tr\|M0WVL1\|M0WVL1_HORVD	1.00E-63	Uncharacterized protein {ECO:0000313\|EnsemblPlants:MLOC_55015.1}
trEMBL	tr\|M0WVL1\|M0WVL1_HORVD	1.00E-59	Uncharacterized protein {ECO:0000313\|EnsemblPlants:MLOC_55015.1}
trEMBL	tr\|M0WVL1\|M0WVL1_HORVD	5.00E-55	Uncharacterized protein {ECO:0000313\|EnsemblPlants:MLOC_55015.1}
trEMBL	tr\|M0WVL1\|M0WVL1_HORVD	1.00E-53	Uncharacterized protein {ECO:0000313\|EnsemblPlants:MLOC_55015.1}
TAIR	AT2G39050	2.00E-57	hydroxyproline-rich glycoprotein family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000007	1069496	1085280	-

Transcript Sequence
>GWHTAAEX003053 ATGAGTTACCATCATCAGCATCATCATCACCATGAGTCAAGCTACAACCCCTCCTTTAGAATCTATTCTAAGACCAATGAGAATTACTCTCTCTCCGTGCGAAACAGCGAAGTTATTCTCGCTCACACAAACCACCACGACGAATACCAGCAATGGTACAAAGATTTTCGTTGGGGAACTGAAGTGAAGGATGAGTACGGCTACCCTGCTTTTGTCCTGATAAATAAAGCAACGGGTTTGGCCATCAAGCACTCCCTCGGACCAAAAAAACCTGTTCGAGTAATTCCATTTAATCCCCAATATTTGGATGAGTCGATTCTGTGGACGGAGAGTCAAGATGTTGGGGAAGGGTTTCACTGCATACGGATGGTGAATAACACAAGGTTGAATTTTGATGCTTTCCATGGCGACAATGGGATCTATGATGGGACCCCCGTCCATCTGTGGGAGTGGCATAATGGACATAATCAGATGTGGAAGATTGTTCCTAACAGCCATCTGCACGCAAATCAGAATGACAGCTTTAGAATATACACAAGGGCCGGAGAGAATTACTCCCTCTCCATCCGGAACGGTGAAGTCGTCCTCGCTCCCACGAGCCACCACGATGAATACCAGCACTGGTATAAGGATTCCCGCTGGGGAGGGCAGGTGAGGGATGAAGCAGGTTTCCCTGCGTTCTCACTGATTAATAAAGCTACTGGTCTGGCTATCAAGCATTCTTTCGGACCAAAACATGCTGTCCGCCTGGTCCCGTTCAATCCCCAATACTTGGATGAGTCTGTTTTATGGACTGAAAGCCAGGACGTGGGGGAGGGTTTCCACTGCATTAGGATGGTTAATAACATAAGCCTGAACTTCGATGCCTTCCATGGTGAAAATGGCGTACATGATGGCACCACCGTTGTCCTCTGGGAGTGGCACAACGGAAAAAATCAGAGCTGGAGGATTGTTCCTTTCTATTCCATTTCCAAATCATTCACAATGAGCAACTACAATCACGACTACCATCATCATAACTACGACGGCCACCATCATCATGACCAATACAACAGTCAAGTCCATCATAACGACCACCATTATGACCATCATCGACCTCTTAGTCATCACCATTCTTTCCATTCAACAGCTACTCCAGTGTCTAATTACCCTCTGGATCAATACAGTCACCACCAAGACACCTTCAGAATATTCACCAAGGCCGGAGAGAATTACTCGCTGTCCATCCGCAACGGCGATGTTATCCTTGTTTTTGCAAACCCCCATGATGAATACCAGCACTGGTATAAAGATCTGCGTTGGGGATCAGAGGTGAAGGACGAAGCAGGTTACTCTGCATTTGCACTGATTAACAAAGCCACCGGTCTGGCCATCAAGCACTCCGTTGGACCAAAACACCCTGTTCGTCTGATTCCGTTCAATCCCGAATACTTGGATGAGTCGATTCTATGGACGGAGAGCCATGATATAGGAAAGGGTTTTCGCTGCATCAGGATGGTGAATAACATAAGGCTAAACTTTGATGCCTTCCAGGGCGATAAGAAACATGGCGGAATTCATGAGGGAACCGCCGTTGTGCTATGGGAGTGGATTAATGGAAAGAATCAGAGCTGGAAGATTGTTCCTTTCCACT

Network for GWHGAAEX003053

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.300
SRP064423	SRR2545915	Juvenile tuber	0.110
SRP108465	SRR5643513	five period of Gastrodia elata	322.390
	SRR5643514	five period of Gastrodia elata	534.860
	SRR5643515	five period of Gastrodia elata	374.330
	SRR5643524	five period of Gastrodia elata	383.030
	SRR5643525	five period of Gastrodia elata	5.120
	SRR5643528	five period of Gastrodia elata	3.060
	SRR5643658	five period of Gastrodia elata	5.200
	SRR5643659	five period of Gastrodia elata	1.220
	SRR5643660	five period of Gastrodia elata	1.150
	SRR5643661	five period of Gastrodia elata	0.860
	SRR5643662	five period of Gastrodia elata	0.490
	SRR5643663	five period of Gastrodia elata	0.810
	SRR5643664	five period of Gastrodia elata	0.900
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	371.420
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	693.250
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	409.480
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	162.820
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	376.370
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	320.290
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	113.440
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	184.050
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	445.370
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	500.480
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1137.260
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1137.260
SRP279888	Gastro	Gastrodia elata tuber	0.54
	Juven	Juvenile tuber	0.77
	Mother_Gastro	Mother tuber of Gastrodia elata	11.66
	Mother_Juven	Mother tuber of Juvenile	4.06