Detail information of GWHGAAEX003055/evm.TU.scaffold_13.32
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|159042302|ref|YP_001541554.1| | 5.00E-42 | metallophosphoesterase [Caldivirga maquilingensis IC-167] |
| KOG | KOG0372 | 0 | Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related |
| nr | gi|743767413|ref|XP_010913969.1| | 0 | PREDICTED: serine/threonine-protein phosphatase PP-X isozyme 2 [Elaeis guineensis] |
| Swissprot | tr|P48528|PPX2_ARATH | 0 | Serine/threonine-protein phosphatase PP-X isozyme 2 |
| trEMBL | tr|M5WHX1|M5WHX1_PRUPE | 0 | Serine/threonine-protein phosphatase {ECO:0000256|RuleBase:RU004273} |
| TAIR | AT5G55260 | 0 | protein phosphatase X 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000007 | 1257223 | 1317335 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003055
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00149.27 | Metallophos | 45 | 237 | 4.90E-37 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K15423 | PPP4C | Glucagon signaling pathway | map04922 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016787 | Molecular Function | hydrolase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 18.220 |
| SRR2545915 | Juvenile tuber | 14.260 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 16.960 |
| SRR5643514 | five period of Gastrodia elata | 15.870 | |
| SRR5643515 | five period of Gastrodia elata | 15.460 | |
| SRR5643524 | five period of Gastrodia elata | 16.930 | |
| SRR5643525 | five period of Gastrodia elata | 22.050 | |
| SRR5643528 | five period of Gastrodia elata | 16.970 | |
| SRR5643658 | five period of Gastrodia elata | 14.520 | |
| SRR5643659 | five period of Gastrodia elata | 13.170 | |
| SRR5643660 | five period of Gastrodia elata | 15.270 | |
| SRR5643661 | five period of Gastrodia elata | 14.220 | |
| SRR5643662 | five period of Gastrodia elata | 12.150 | |
| SRR5643663 | five period of Gastrodia elata | 13.220 | |
| SRR5643664 | five period of Gastrodia elata | 12.050 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 16.970 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 22.220 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 18.800 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 17.970 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 17.430 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 19.620 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 16.730 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 17.980 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 20.760 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 19.840 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 21.720 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 21.720 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 17.09 |
| Juven | Juvenile tuber | 16.05 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 12.88 | |
| Mother_Juven | Mother tuber of Juvenile | 12.01 |