Gene detail

Detail information of GWHGAAEX003056/evm.TU.scaffold_13.35

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|476001811\|gb\|AGI62047.1\|	1.13E-179	AP2-11 [Erycina pusilla]
Swissprot	tr\|P47927\|AP2_ARATH	6.00E-98	Floral homeotic protein APETALA 2
trEMBL	tr\|M9QR34\|M9QR34_9ASPA	4.00E-180	AP2-11 {ECO:0000313\|EMBL:AGI62047.1}
TAIR	AT2G28550	2.00E-102	related to AP2.7

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000007	1462341	1559090	+

Transcript Sequence
>GWHTAAEX003056 TTGACAACTAAGATTTGTTTTTATACATCTCTCGGGTAGCGATCGTGCTCCTGCTACGAGAAGGTGGAGGCATACATCTCTCCTCTGCCAAGCCCTAACCGAGCCCCTTCCTTTCCTTTTAGCCCATAGGATTTCATTTCTCTTTATTCTTCTTCTATTGTGAGCTCGAAAGAAATTAGGAGAAGCACCTGCAGCAAATCGAACCACACTTCTGCGAACCCTAATCTTCTTGAAGATGATAAATAAAAGATGCTTCGATTGAAAGCTTCGAATGGTATTCTCTTGATCAATGGAATGGAAGAATAATGCTCAACCAACTCGATATTGAAGCTTCCCCTTAATTCGAGCTAACAGAGGCTTAATTATTGTTTGGTAGCTCGGCGTCTATGTAAAGAGGATTTCCTTACTATTTTTTCAACTATTTTAAAAATAAAATTAAGCGAAACAGCCTTTAAATTATTTGCTATCAAAATATTTGGATATAAAATATTTATTTTTTTTTGCAAAATTTTTTGTGAGAAAAAATTTACTTAATTTTTTATGAACTATTTAGAGCATGTGTATGTATATATTTGAATTCATTAAAAACGGCTGATCATGTAGACCACCGGCATCCCCTGCGGAAGCAGACAAGCAAAGCCCGAAATTTTTTAAAAACCTTAATCCTTCTTCCACTAAATTAAAAACAACATTAAATTTTAAATTTCTAATTATTTTGCGGGCGAGCTATCTCGTCTTTAAGCTCGTCTCTCGCCTCTTTTACTCTACCATCTGCTCTCTTTCCTCTTCGGCTTCTCCGCCTAACACTATTTCGCGGCCGCAAACTTCACCTCGACGTCGATACTTGACTCCGCCATCGCTTATTGTCAGAAAGCTTCTTTGATTGCCCTTTTTTTACTGTATTTTCAATTTGGCCACGTATTTTTAGTTGTTGCTGTTTCCTTCTTCATCGGCGACGCTTATCTGAAATGATTTTGATCTATTTCTTCGTTTTTCTACCTAATTGTTGAAGAGGAGTGATTAGAGCCGAGAACGGAGTGGAAGGAGTCCTATTACTTCTCTGCAATATATGCATGAAAATGTAAAGGCCAATGTTCTAAAAGCTGCAGAAGCTGTAATTTATAAGTTTTAGAGATGGTGCTAGATCTCAACGTGGCGTTGGGGAGTGAGTCACTTTCAGCGCAGGCGAAACTTGTTCCAGAACGATCGGGTGATGTTCGGTTGGATGAATCCGGAACATCTAACTCGTCTGTTCTCAATGCTGAGGATTTCAGTAACATGTGTGAAGAAGACTCGTGCTCTACACTACCTGCTTTCAGGTTCGGTATCCTGAAGGATGCAGAAGAGATAGAAGACTACGGCGATGAGATCGATGTTGCATCCAAGGCCGACCAGATAACGCATCAGTTATTTCCGCCTCAACCGCTAACTATTTTTGAAGGCCCGATCAGGGGTGCCTTATTGGCTTCATCATCAGCGAGTCCCCATTTGGTAAATCTCCGTTTCTTCAAGGCCGACAAGAAAGATGCAGGGGAAGTTAAGCATCTTCATCCACAGCAACAGCAGCCTCAGGTAAAGAAGAGCAGACGTGGGCCCCGATCCAGGAGCTCTCAATACAGGGGAGTCACGTTCTACAGGCGAACTGGAAGATGGGAATCTCACATCTGGGATTGCGGGAAACAAGTCTACTTGGGGGGGTTCGATACCGCCCATGCTGCGGCCAGAGCGTATGATCGTGCTGCCATTAAATTTCGTGGAGTTGATGCTGATATCAATTTCAATCTGAGTGACTATGATGATGATTTGAGGCAGATGAGAAATCTAACTAAGGAGGAGTTTGTGCATATACTTCGCCGCCAAAGCACGGGATTCTCTAGGGGAAGCTCAAAATATAGAGGCGTGACCCTTCACAAATGTGGCAGGTGGGAGGCTCGGATGGGACAGTTACTTGGCAAAAAGTACATATACCTCGGATTATATGATAGCGAAGTTGAAGCTGCCAGGGCCTATGATAAAGCAGCTATTAAATGTAATGGAAGGGAAGCTGTCACAAATTTTGAGCCGAGTGCTTATGAAGGAGAACTTCTTTCTAAGGATGACGGTGAAGCTTTTGGTGAAGACATTGACTTGAATTTGAGCATTTCTCAGCCTTCTACTGGCACTTTAAAAAGAAAATATAATTCTGAGGGCATACAAATCAACTGCGGCACGTTCGAAGCTATTAATGTGAGGAGATTGAATGAAAATTCAATGAGCACGAAGGCTGATGCAGGTTTATCCAGCTGGAATTGGAAAATCCATGGTCTCTCCCACCTGCAGCCGTTCTCTTTTGCAGCATCATCAGGATTCTCTGCGTCGAATGTGATATCCAACCCTTTGCCGCCATCACAGTCTCTGGCCAACACTCACCTCATCCATTCCCAGTCTCTTGCCACAGGCCACCACTTCTTCCAGGGCTGAGCACGTGTTTTGTGTTCCTTATTATTTTTTGCATCCATAAAAATTTCAAAGCCTACGGCTTAACGGTAGCCTATTGCCTTTAATTGAATAAACAGGTACTTTTTTGGGCGTTGTATTTATTTACAACGACAATATATATATATATATATA

Network for GWHGAAEX003056

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.19	AP2	159	208	5.80E-09
PF00847.19	AP2	251	301	9.40E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-AP2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	6.920
SRP064423	SRR2545915	Juvenile tuber	5.550
SRP108465	SRR5643513	five period of Gastrodia elata	28.910
	SRR5643514	five period of Gastrodia elata	24.180
	SRR5643515	five period of Gastrodia elata	24.310
	SRR5643524	five period of Gastrodia elata	26.870
	SRR5643525	five period of Gastrodia elata	2.990
	SRR5643528	five period of Gastrodia elata	2.810
	SRR5643658	five period of Gastrodia elata	3.230
	SRR5643659	five period of Gastrodia elata	6.590
	SRR5643660	five period of Gastrodia elata	6.420
	SRR5643661	five period of Gastrodia elata	7.780
	SRR5643662	five period of Gastrodia elata	7.810
	SRR5643663	five period of Gastrodia elata	5.680
	SRR5643664	five period of Gastrodia elata	6.860
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	17.450
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	28.860
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	23.810
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	15.550
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	16.500
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	11.400
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	19.260
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	12.890
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	22.850
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	24.060
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	33.430
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	33.430
SRP279888	Gastro	Gastrodia elata tuber	3.00
	Juven	Juvenile tuber	14.96
	Mother_Gastro	Mother tuber of Gastrodia elata	11.68
	Mother_Juven	Mother tuber of Juvenile	14.19