Detail information of GWHGAAEX003068/evm.TU.scaffold_13.51
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 8.00E-149 | FOG: PPR repeat |
| nr | gi|743885460|ref|XP_010909928.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At4g14170-like [Elaeis guineensis] |
| Swissprot | tr|Q0WN60|PPR48_ARATH | 8.00E-149 | Pentatricopeptide repeat-containing protein At1g18485 |
| trEMBL | tr|Q2QUQ5|Q2QUQ5_ORYSJ | 0 | Pentatricopeptide, putative, expressed {ECO:0000313|EMBL:ABA96976.1} |
| TAIR | AT1G18480_2 | 8.00E-149 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000007 | 2628827 | 2631929 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003068
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 81 | 105 | 0.4 |
| PF01535.19 | PPR | 185 | 215 | 0.0012 |
| PF01535.19 | PPR | 258 | 281 | 0.055 |
| PF01535.19 | PPR | 286 | 316 | 0.0012 |
| PF13041.5 | PPR_2 | 383 | 432 | 1.90E-09 |
| PF01535.19 | PPR | 459 | 479 | 0.11 |
| PF01535.19 | PPR | 486 | 515 | 6.60E-05 |
| PF01535.19 | PPR | 588 | 617 | 1.20E-09 |
| PF01535.19 | PPR | 725 | 752 | 0.083 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.240 |
| SRR2545915 | Juvenile tuber | 1.780 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.890 |
| SRR5643514 | five period of Gastrodia elata | 1.810 | |
| SRR5643515 | five period of Gastrodia elata | 2.030 | |
| SRR5643524 | five period of Gastrodia elata | 1.720 | |
| SRR5643525 | five period of Gastrodia elata | 1.290 | |
| SRR5643528 | five period of Gastrodia elata | 0.800 | |
| SRR5643658 | five period of Gastrodia elata | 0.680 | |
| SRR5643659 | five period of Gastrodia elata | 2.390 | |
| SRR5643660 | five period of Gastrodia elata | 2.390 | |
| SRR5643661 | five period of Gastrodia elata | 2.630 | |
| SRR5643662 | five period of Gastrodia elata | 2.570 | |
| SRR5643663 | five period of Gastrodia elata | 2.570 | |
| SRR5643664 | five period of Gastrodia elata | 2.330 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.480 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.710 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 2.460 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.460 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.660 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.360 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.450 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.620 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 3.080 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.140 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 3.560 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 3.560 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.59 |
| Juven | Juvenile tuber | 2.05 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.50 | |
| Mother_Juven | Mother tuber of Juvenile | 0.85 |