Gene detail

Detail information of GWHGAAEX003077/evm.TU.scaffold_13.68

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|332666557\|ref\|YP_004449345.1\|	3.00E-112	beta-galactosidase [Haliscomenobacter hydrossis DSM 1100]
KOG	KOG0626	0	Beta-glucosidase, lactase phlorizinhydrolase, and related proteins
nr	gi\|297743886\|emb\|CBI36856.3\|	0	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q60DX8\|BGL22_ORYSJ	0	Beta-glucosidase 22 (Precursor)
trEMBL	tr\|N1R2Z1\|N1R2Z1_AEGTA	0	Lactase-phlorizin hydrolase {ECO:0000313\|EMBL:EMT14533.1}
TAIR	HS4504967	0	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000007	3780799	3841524	-

Transcript Sequence
>GWHTAAEX003077 ATGGGTGTTAAGGTGGGGGTTTTGGCAGCAGTTCTGCTTTTGTTGTGCTCGAAGCATTGTAATATCATCTCGACTGTGCGCTGCCTTTCCGAGGAGTTCACCAGAGAGGACTTCCCTGCAGATTTTGTCTTCGGATCCGGAACTTCGGCTTTTCAGTATGAGGGTGCGTGGGCTGAGGATGGAAAGTCTCCAAGCATTTGGGATACTTTTACTCATCAAGGTTGGACAGCTGGCAACGTAGCTGATGTGTCTTCTAATGGTTACCACAAATATAAGGAAGATGTCAAGCTCATGAGTGATACTGGACTCGAAGCTTATAGACTATCTATCTCCTGGCCAAGACTGCTCCCAAATGGGAGAGGACAGGTGAATCTTAAAGCCCTACATTATTACAATAGTGTCATCAACGAGTTGATTAAGCATGGAATTCAGCCTTGGGTGACCCTGCATCATCTGGATGTTCCTCAGGTTCTACAAGATGAGTATGGAGGATGGATAAGCCCAAAAATAATTGATGATTTTAAGGAACTTGCTGATGTGTGTTTTAAAGAGTTTGGTGACCGGGTTTCTCATTGGACTACCATTAATCAGCCCAACATTATCGCCTTGGCCTCCTTTGATTATGGACGTTTCCCTCCTAAAAGGTGTTCACCTCCATATGGCGATACTTGTAGTGGAGGAAATTCCACAGTCGAGCCATACATGGCTATCCATAATTATGTATTGGCTCATTCTGCTGTCGCCGAGTTGTATAGGAAAAAATATCGGGCCATACAAAATGGACAAATTGGCATAACCATCTATTCAATGTGGTTCAAACCATTGACAAATTCTACATTGGATGTTCTGGCAACTAAGAGAGTCCGCGACTTCATGATTGGCGGTATTCTGAACCCTGTCTTGTTTGGAGATTACCCTGAGAGCATGAAGAAAAATGCTGGATCAAGGCTCCCATCCTTCACATATTCTGAGTCCCAAAAATTGAAGGGCTCGTGTGATTTCATCGGCATCAACTATTATGTCTCAATGTATGTGGTTGATGACTCCGATGCTCTTCGCAAGTTGGTTCTTCGAGATTCGAGTTCAGACATGTTTGCTAAGTTCACAGTTTCTAAGAATGTTCCACCAGAAAGTAAGCTTCTTCCACCTGGTTACCATATCAAAGATTTTGAAGGCCTAAGAAATTTGCTGATTTATCTCAAAAACACCTACAGAAATACTCCTATTTACGTTCATGAAAATGGTTATGGTTTCGGTGTTGTCGACACGATGCATGACACAGAAAGGATATCCTTTCTAAGCGGCTTCATTGGAAGTGTACTTGATTCTATCAGGGAAGGAGCAGATGTGAGGGGATACTTTATTTGGTCATTTGTGGACTCCTTTGAGTTGGTGCAAGGATATAATTCACGATTCGGGCTATACCATGTGGATTTTGAGAACAGCGAACTGCATTATAATATCATCTCGACTGTGCGCTGCCTTTCCGAGGAGTTCACCAGAGAGGACTTCCCTGCAGATTTTGTCTTCGGATCCGGAACGTCGGCTTATCAGTATGAGGGTGCGTGGGCTGAGGATGGAAAGTCTCCAAGCATTTGGGATACTTTTACTCATCAAGGTTGGACAGCTGGCAACGTAGCTGATGTGTCTTCTAATGGTTACCACAAATATAAGGAAGATGTCAAGCTCATGAGTGATACTGGACTCGAAGCTTATAGACTATCTATCTCCTGGCCAAGACTGCTCCCAAATGGGAGAGGGCAGGTGAATCTTAAAGCCCTACATTATTACAACAGTGTCATCGACGAGTTGATCAAGCATGGAATTCAGCCTTGTGTGACCCTGCATCATCTGGATGTTCCTCAGGTTCTACAAGATGAGTATGGAGGATGGCTAAGCCCAAAAATCATTGATGATTTCAAGGAACTTGCTGATGTGTGTTTTAAAGAGTTTGGTGACCGGGTTTCTCGCTGGACTACAATTAATCAGCCCAACATTAACGCCTTGGCTGCCTTTGATTATGGACTTTTCCCTCCTAAAAGGTGTTCTCATCCATATGGCGATACTTGTAGTGGAGGAAATTCCACAGTCGAGCCATACATGGCTATGCATAATTATATATTGGCTCATTCTGCAGTCGCCGAGTTGTATAGGGAAAAATATCGGGCCATACAAAATGGACAAATTGGCATAACCATCTATTCAATGTGGTTCAAACCATTGACAAATTCTACATTGGATGTTATGGCAACTAAGAGAGTCCGCGACTTCATGATTGGCGGTATTCTGAACCCAGTCTTGTTTGGAGACTACCCTGAGAGCATGAAGAAAAATGCTGGATCAAGGCTCCCATCCTTCACATATTCTGAGTCCCAAAAATTGAAGGGCTCGTGTGATTTCATCGGCATCAACTATTATGTCTCAATGTATGTGGTTGATGACTCCGATGCTCTTTGCAAGTTGGCTCTTCGAGATTCGAGTTCAGACATGTTTGCTAAGTTCACAGCCTCTAAGAATGTTCCACCACAAAGTAAGCTTCTTCCACCGGGTTACCATATCAAAGATTTTGAAGGCCTAAGAAATTTGCTGATTTATCTCAAAAACACCTACAGAAATACTCCTATTTACGTTCATGAAAATGGTTATGGTTTGGGTGTTGTTGACACGATGCATGACACAGAAAGGATATCCTTTCTAAGCGGCTTCATTGGAAGTGTACTTGATTCTATCAGGGAAGGAGCAGATGTGAGGGGATACTTTATTTGGTCATTTGTGGACTCCTTTGAGTTGGTGCAAGGATATAATTCACGATTCGGGCTATACCATGTGGATTTTGAGAACAGCGAACTGGTGAGGTCGCCGAAGCTCTCTGCATTTTGGTACCGAAATTTTCTCAAAAATGAGGGTGCAATTAAGAGAATCGAGAGCTCATGA

Network for GWHGAAEX003077

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00232.17	Glyco_hydro_1	35	482	2.40E-134
PF00232.17	Glyco_hydro_1	501	969	3.60E-141

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01229	LCT	Metabolic pathways	map01100
		Galactose metabolism	map00052
		Carbohydrate digestion and absorption	map04973

Gene Ontology

GO term	Ontology	Name
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	49.060
SRP064423	SRR2545915	Juvenile tuber	54.290
SRP108465	SRR5643513	five period of Gastrodia elata	75.320
	SRR5643514	five period of Gastrodia elata	45.760
	SRR5643515	five period of Gastrodia elata	71.960
	SRR5643524	five period of Gastrodia elata	55.420
	SRR5643525	five period of Gastrodia elata	11.520
	SRR5643528	five period of Gastrodia elata	12.960
	SRR5643658	five period of Gastrodia elata	15.710
	SRR5643659	five period of Gastrodia elata	44.240
	SRR5643660	five period of Gastrodia elata	42.820
	SRR5643661	five period of Gastrodia elata	43.060
	SRR5643662	five period of Gastrodia elata	35.130
	SRR5643663	five period of Gastrodia elata	57.680
	SRR5643664	five period of Gastrodia elata	27.750
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	48.570
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	72.280
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	49.470
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	39.130
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	40.030
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	43.200
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	43.250
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	53.780
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	63.140
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	49.670
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	77.230
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	77.230
SRP279888	Gastro	Gastrodia elata tuber	27.30
	Juven	Juvenile tuber	23.73
	Mother_Gastro	Mother tuber of Gastrodia elata	15.81
	Mother_Juven	Mother tuber of Juvenile	26.47