Gene detail

Detail information of GWHGAAEX003081/evm.TU.scaffold_13.77

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743882070\|ref\|XP_010909059.1\|	4.25E-161	PREDICTED: probable mediator of RNA polymerase II transcription subunit 26b isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q9FHK9\|MD26B_ARATH	3.00E-89	Probable mediator of RNA polymerase II transcription subunit 26b
trEMBL	tr\|M0SHL6\|M0SHL6_MUSAM	7.00E-150	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P25000_001}
TAIR	AT5G05140	1.00E-88	Transcription elongation factor (TFIIS) family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000007	4192173	4195616	-

Transcript Sequence
>GWHTAAEX003081 ACGGTAAATAATAACGAAGAATTTAATTAATACGTGAGACTGAGTGCTTCGGAAACGCTAGAGAATTCCCTCTGCGATCGATCCCTTTCACTGGCTCGGGCAATCTATTTTTGAAGAAAAGAAGAAATCTCACCGAAAGAGGGGTGAGAAGAGGAAGAAGAGATTGAAGCTCTGCAATCTCCATCCATCTTCAGAGACGATATTTTTGTTTCCGTCCCTAGCAGCGGAAAAAAAAGAGGGGGAAATTTAGGGCTGGTCAGAAACTATAATCCAAAAGATTGTTCAAATTGGCTGTCAAATCGAAAGGATCGCGATTGCTGGAGCAAACCGAATTTCTATAGAAATTTGGGCGGTTGATTTGGTTTTCTTCTTCGGTTCCGATCAAATAGAGCGCGATACAAGGCGCTCCCTGATTCCGATTTTGTTTTCTCGCCGAACATCGGCGATTGCTGTTCGCTCGATCGATGGCGGGCAAATCCTTGTCGTTGGATTACTGGAGAAAGTTTTTTCGAAGCGCGAACTCTGATATCTTCGAGGTGATCGAGCAAGCGATCGTGGTTGCCGCGGCTGATTGCCCTAAGGAGTTCCGGAGCAGAAGGGATGGGATTGCGGAGAAGCTCTTCACCTGTAGGCTTGCGCGATGCTTTGGATGCAATAACGTGGAGCTTCAGGTTCCTGATGATGGCGACGACGTGAGGGAAGAAGAAGGAGGCGGAAGCGTGAAAAGGGAGGCGGGCGAGAAAAGCAGTAAAATGGATAGCTGTAACGGTGAACCTGAAGATTTGAACAGGCTAGGATTGAGCAACTACAGCTATGATGAGGCAGAGGCGCTCACAGAAGTTATGGAGGAGGAAAGCCGCATGGTTGCGGAGGTTCAGAGGATAAAGGAGGTTCTACTCAACAAGCTTAATGAGTCCGAATCTGTCTTGTATGATTCATTGAGGAGGTTGGAGCTGATGCAACTTTCTGTAGAAACTCTCAAGGCAACTGAGATTGGAAGGGCTGTCAATGGTCTGCGGAAACACAGCTCCAAGTCGATTCGCATTCTTGTTAAGACGCTCATCGAGGGTTGGAAGGTGTTGGCGGATGAATGGTATAATTCTACTGCTGCAATTACTGATCACTCTCCTGACTCAGCCAATATAATGGAGGAGGGCTTGCCTTCTCCTCCAATGGATGAAGGTGCATTCTTAGTCACCCAGACCACTTCTATTCAACTTTCTGAGTTCTTTGATGGGTTGGATGATGATGGAAACTTCCGGGCTGCTGGAGAGCTGGAGAAAAGCTGGAATACCAATGGGCCTGTGAGGAGGCAAGAGCTTCCTCAGCCACTAGAAGCCCCAGCTGTAAAAGCACCAGTGAGGAGCCAGGAAGCTGCTGTTCGACAAGCAAAGCCACATTCTATTCCTAGCTCACAATCGCCACCTCAGGCTGTGTCCAACAAGCCAGCCAAGCCGTCCTCTGCTGATTCCGGTCCCTGCAGAGCCCCAAAGCTATCTTTTGTTCAAAAACCGGCTAGCAATTTCTCCGATGCCCAGAGAAAGCTCACCTGCGGGCTGCAAGATAAGCCAAAGCGTCCTGAGGAAATATCAGTTGATGCTAAGCTGGAGCAGACGAAGAGGAAGCTGCATGAACGATATCAGCAAGTAGAGAATGCAAAGCGCCAACGGACAATACAAGTGATGGAGCTGCACGATATTCCAAAGCCGCGCGAAAAAGCGACAAACACGAAGGCAAAGGGCCAGTTCCGCAGCTGGGGGAACGCGAGGCGTTAATTTTGATAGGCAACTGACAAATCCTCCAGAGAGTATTTGAAGCATGGCTGTTATCTCTGAGGAGGTTGGTTTGGAGTTTCGGAAAGCTGAAATTCGCGGTTGCTGGTTGGGAAAGATGAAATGCGAATAGCTCTTTGTTGGCCAGTGTTCGAGATTGATCTCAGCACTCAAGTGTAATGACATTGTTGCAGCTAACCCACACTGTCTAGCAGAAGAGAAGTCCCAATCTACAATTTGGATAATAAATTTTTCTTTTCTCTCATGATTGACCACCGCTCATTATCCTCTTGTATTTTTTCTTAACTACTTTGTTCCCGTTGGTAATTATGTAATTGAATCCCTTATAAATGTTAAATTGCAAATTTTAGTTCCCCAATATGTCATTTTCTCCTTTAGTTGAATTATTGGCTGCTCTCAGCTTGCCAGCTTTTTTATTTAATCTCTTATTGACTTTATTTGTGAAAAATCAACGCTCATTCTTCA

Network for GWHGAAEX003081

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08711.10	Med26	159	204	1.80E-10

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	IWS1

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005634	Cellular Component	nucleus

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	42.450
SRP064423	SRR2545915	Juvenile tuber	36.840
SRP108465	SRR5643513	five period of Gastrodia elata	40.900
	SRR5643514	five period of Gastrodia elata	35.960
	SRR5643515	five period of Gastrodia elata	72.140
	SRR5643524	five period of Gastrodia elata	39.990
	SRR5643525	five period of Gastrodia elata	80.680
	SRR5643528	five period of Gastrodia elata	95.260
	SRR5643658	five period of Gastrodia elata	66.400
	SRR5643659	five period of Gastrodia elata	56.100
	SRR5643660	five period of Gastrodia elata	32.350
	SRR5643661	five period of Gastrodia elata	40.060
	SRR5643662	five period of Gastrodia elata	45.310
	SRR5643663	five period of Gastrodia elata	32.930
	SRR5643664	five period of Gastrodia elata	50.250
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	48.490
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	57.920
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	39.400
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	51.650
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	55.160
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	69.160
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	63.680
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	47.490
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	30.470
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	55.610
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	38.480
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	38.480
SRP279888	Gastro	Gastrodia elata tuber	25.33
	Juven	Juvenile tuber	33.80
	Mother_Gastro	Mother tuber of Gastrodia elata	87.11
	Mother_Juven	Mother tuber of Juvenile	55.13