Gene detail

Detail information of GWHGAAEX003082/evm.TU.scaffold_13.78

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|189502744\|ref\|YP_001958461.1\|	2.00E-29	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
KOG	KOG0192	0	Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs
nr	gi\|672186396\|ref\|XP_008813069.1\|	0	PREDICTED: serine/threonine-protein kinase HT1 [Phoenix dactylifera]
Swissprot	tr\|Q2MHE4\|HT1_ARATH	6.00E-62	Serine/threonine-protein kinase HT1
trEMBL	tr\|A0A059D175\|A0A059D175_EUCGR	0	Uncharacterized protein {ECO:0000313\|EMBL:KCW84186.1}
TAIR	AT3G22750	0	Protein kinase superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000007	4216963	4238160	-

Transcript Sequence
>GWHTAAEX003082 CTCTCTCTCTCTCTCTCTCCCACATCTTTATTTTTATACTTTTCTATTGAATCCTGGCTCCGTTTTTTCGTGTATTCCCTCGAGTTCTTCTATTCGTAATGTCGTAAATCGTAATGAACTCAGATTGTGTGCAGAAAAATGGATCTTATAATGTTTTTGTGATGTGATGTGAAACTGAGTACTGAAGTTTTCTCGAATTCAACTTTGTTAATTTTTTCTTTCTGTTCTTTAACTTGAAAATTTTCCGAAATGAATTCGATGGAGGTACCAAATATTGAATCTATCGTTAATGAGGCCAAGGAAGGCACAATTCCGCAATTAAAAGGATACGGGAGCTTTAAGAATAGAGATATGTTTCTTAGGGCTGATCAAATTGACATCAAAAGCTTAGACATTCAATTAGAGAAAAAGCTTTCCAAGATTTGGCTAAATGATGTGCTTGGATCCCGAAGGCCCAAGGAGGAATGGGAAATTGATCTTTCCAAGCTAGAAATATGGTATGTTGTGGCTCGTGGGAATTATGGCACCGTGTTTCGAGGCACTTATGATGGTCAAGACGTTGCAGTAAAACTATTGGACTGGGGAGTAGAAGGACGTACAACTGATGCTGAAACTGCTGCTCTTCGATCATCATTTCAACAAGAAGTTACTGTGTGGAACAAACTTGACAACAAAAATGTTGTTAAGTTTGTTGGAGCTTCAATGGGAACCTCAAACCTTAAAATCCCATGCGGCAATTACCCACTTCCATCACTAGCATGCTGTGTTGTTGTGGAATACATTCCCGGAGGCACATTGAAACAGTTTCTTATCAAACACATTCGAAGGAAGTTGCCTTTCAAGGATGTGATTCAGCTCGCTTTGGACCTTGCCGAAGGCTTGAGTTATCTTCACTCTAAAAAGATTGTCCATCGTGATGTAAAAACTGAAAATATGCTGCTTACTACCAGTAGAACACTTAAGATTGCTGACTTTGGTGTTGCTCGTGTTGAAGCTCAGAATCCCAAAGACATGACCGGTGAAACCGGTACTCTTAATTATATGGCTCCTGAGGTTCTAGAAGGAAAGCCTTACAACAGAAAGTGTGATGTGTATAGCTTTGGCATTTGCTTGTGGGAGATATATGCTTGTGACATGCCGTACTATAACCTTTCTTTCACAGACATCTATAACGCAGTCGTTCACCAGAATTTGCGACCCGAAATACCAAGATGCTGCCCGAACTCATTGGGAAGCATCATGAAAAAGTGTTGGGATGCAAATCCAGACAAAAGGCCGGAGATGGATGAGGTCGTCAGGCTTATGAAGGCAATTGACAGAAGCAAAGGGGGCGGCATGATCCCGGAAGATCAATCCCAAGGCTGCTTCTGCTTTGCACCAACTCGAGGCCCTTGAGTCTATTTCACTATGCTTTTCAAAGGAGGAAGTGTCATGCAGCACCAGCCCTTTGGAAATAGCCAAGCTTGATGTTTCATTTGCTGGCTACTAATTTGTCTCCTTTCATTATCGGATCATTTTTTATTTGTTTGATTATTTCTTATACCCATGCAGCCAAGTGGTTGCAGTTTGTCCAGGTTCTTCAAAACGCATGGATTAAACTTCATTTTTTTAATGTTTGTCAACCATAGAGTTCCAACTTAAGCGTCTTGTGGCAGCACTTGATATGAATATGGTAATTATGTGAGGTCTTTTCTGATAAATATTCTAGCCATGTATTTCAAAATCTTGTAGAAATGTGCGTCTAAGA

Network for GWHGAAEX003082

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.16	Pkinase_Tyr	85	350	8.70E-62

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TKL-Pl-4

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.020
SRP064423	SRR2545915	Juvenile tuber	0.700
SRP108465	SRR5643513	five period of Gastrodia elata	0.000
	SRR5643514	five period of Gastrodia elata	0.860
	SRR5643515	five period of Gastrodia elata	0.210
	SRR5643524	five period of Gastrodia elata	0.610
	SRR5643525	five period of Gastrodia elata	0.000
	SRR5643528	five period of Gastrodia elata	0.000
	SRR5643658	five period of Gastrodia elata	0.030
	SRR5643659	five period of Gastrodia elata	0.110
	SRR5643660	five period of Gastrodia elata	0.040
	SRR5643661	five period of Gastrodia elata	0.000
	SRR5643662	five period of Gastrodia elata	0.000
	SRR5643663	five period of Gastrodia elata	0.130
	SRR5643664	five period of Gastrodia elata	0.000
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.040
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.000
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.160
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	0.000
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.000
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.000
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.000
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	0.060
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.000
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	0.050
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	0.050
SRP279888	Gastro	Gastrodia elata tuber	0.03
	Juven	Juvenile tuber	0.11
	Mother_Gastro	Mother tuber of Gastrodia elata	0.47
	Mother_Juven	Mother tuber of Juvenile	0.33