Detail information of GWHGAAEX003086/evm.TU.scaffold_13.86
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|55378225|ref|YP_136076.1| | 1.00E-74 | xanthine/uracil permease family protein [Haloarcula marismortui ATCC 43049] |
| KOG | KOG1292 | 0 | Xanthine/uracil transporters |
| nr | gi|695013172|ref|XP_009393366.1| | 0 | PREDICTED: nucleobase-ascorbate transporter 12-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q3E7D0|NAT12_ARATH | 0 | Nucleobase-ascorbate transporter 12 |
| trEMBL | tr|M0SGZ8|M0SGZ8_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P22820_001} |
| TAIR | AT2G27810 | 0 | nucleobase-ascorbate transporter 12 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000007 | 4794122 | 4819405 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003086
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00860.19 | Xan_ur_permease | 178 | 602 | 4.70E-60 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0022857 | Molecular Function | transmembrane transporter activity |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.560 |
| SRR2545915 | Juvenile tuber | 6.850 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.860 |
| SRR5643514 | five period of Gastrodia elata | 5.870 | |
| SRR5643515 | five period of Gastrodia elata | 4.760 | |
| SRR5643524 | five period of Gastrodia elata | 5.590 | |
| SRR5643525 | five period of Gastrodia elata | 3.830 | |
| SRR5643528 | five period of Gastrodia elata | 1.800 | |
| SRR5643658 | five period of Gastrodia elata | 2.990 | |
| SRR5643659 | five period of Gastrodia elata | 5.240 | |
| SRR5643660 | five period of Gastrodia elata | 4.330 | |
| SRR5643661 | five period of Gastrodia elata | 5.370 | |
| SRR5643662 | five period of Gastrodia elata | 3.720 | |
| SRR5643663 | five period of Gastrodia elata | 5.430 | |
| SRR5643664 | five period of Gastrodia elata | 3.510 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 4.220 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 6.300 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 3.890 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.660 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 2.220 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.890 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.670 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 8.890 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.710 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.090 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.090 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 2.36 |
| Juven | Juvenile tuber | 6.10 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 0.81 | |
| Mother_Juven | Mother tuber of Juvenile | 2.47 |