Gene detail

Detail information of GWHGAAEX003092/evm.TU.scaffold_13.96

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|22298872\|ref\|NP_682119.1\|	3.00E-31	ABC transporter ATP-binding protein [Thermosynechococcus elongatus BP-1]
KOG	KOG0065	0	Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily
nr	gi\|743802684\|ref\|XP_010926683.1\|	0	PREDICTED: pleiotropic drug resistance protein 2-like [Elaeis guineensis]
Swissprot	tr\|Q2PCF1\|PDR2_NICPL	0	Pleiotropic drug resistance protein 2
trEMBL	tr\|A0A059DFH7\|A0A059DFH7_EUCGR	0	Uncharacterized protein {ECO:0000313\|EMBL:KCW89229.1}
TAIR	AT2G36380	0	pleiotropic drug resistance 6

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000007	5206652	5217580	-

Transcript Sequence
>GWHTAAEX003092 AGAGAGAGAGAGAGAGGAGGAAAGAACGTACTCTCAATTGTTTGTACACTCGTGTCCCACAGCACAGTATCACACCTTATATATATATAGCCCTCCCCCTTCCTCTTCATCTGGAGAAAAAACCCTCGATTTGACTGAAGAATCTCAACGAGTTGGATATGCTTTTTCTCCAACTGTAACACCGTCAAATCTCTTTAAATTTTCTTTAAAATGGCCGCTATGCTAAGCATTGCCCCCGAAGATCCCGGCATGATCAGCAGCGGCCGCAAGAGCTGGATCTCCTCCAGCTTTGGCGACCCGACGGACGTTTTCCGACGGAGCATCGCCGCCGAGGAAGATGAAGAAGAAAACCTTAAGTGGGCCGCTCTTGAGAAACTCCCCACTTACGACCGAATAAGAAAAGGGATTCTCCGGCAGCTAGGCGATGACGGCAAAATTTTCAGCAGCGAGATCGATCTCCAAAAGCTCAGCATTCAGGATAGAAAGATTCTCGTTGATCGAATTTTGAAGATAGTGGAGGAGGATAACGAGCGGTTCTTAAAACGACACAGAGACCGATTCAACCATGTTGGGCTTGAGATTCCGAAGATAGAGGTGAGGTTCGAGAATTTATCAGTTGAGGCCGATGCGTACGTTGGCGGCAGAGCGCTACCTACTTTGTGGAATGCTACCATTAATAGCCTTGAGGGATTATTTGGATTTATTAAGCTCGGTCAATCTAAGAAAAGAGTCAACAAGATACTTTCTGATGTCAGCGGAACTCTGAAGCCATCAAGGATGTCTCTGCTTCTTGGGCCTCCAGGCTCTGGGAAAACAACACTTCTTCTTGCTCTTGCTGGAAGGATTGATAAAACGCTAAGGGTTTCTGGTAAGATCACATATTGTGGTCATGAATTGTCAGAATTTTTCCCTCAGAGAACAAGTGCCTACATAAGCCAGCATGATATTCATATTGGTGAGATGACAGTTAGGGAAACCTTTAATTTCTCGGGACGATGCTTGGGTGTAGGCACTAGATATGAACTAATGTCAGAGTTAACAAGAAGAGAAAGAGATGCGGGCATTAAACCAGACCCTGAAATTGATGCCTTTATGAAGGCAGTTTCTGTAGGAGGGCAAAACTCTAGCCTAGCAACTGACTATATTCTTAAGGTGCTTGGGCTTGATATATGTGCGGATATTATTGTCGGAGATGAAATGAGAAGGGGAATTTCTGGTGGACAAAAGAAACGTGTGACCACAGGCGAGATGTTGGCTGGACCTGCAAGGGCATTATTTATGGATGAAATATCAACTGGACTTGATAGCTCCACCACTTTTCAGATTGTCAAATTCATTAGACAGATGGTGCATGTAATGGATGGAACAGTGCTCATCTCCCTCCTTCAGCCAGCGCCTGAAACTTTTGAACTTTTTGATGATGTTATTCTATTATCTGAGGGCAAGATTGCCTATCAAGGACCCCGTGAAAATGTACTTACCTTCTTTGAGTTCATGGGGTTCAAATGCCCAGAAAGAAAAGGAGTTGCTGACTTCCTTCAAGAGGTCACATCAAGGAAGGACCAACAACAATACTGGTTCAGGGAAGACCAGCCTTACCGTTATATTCCAGTCTCTGAATTTTCCGACTCTTTCAAAGAATTTTATATTGGAAAAAGTCTTACGGAATATCTCAAAACTCCTTTTGATAAATCCGCAACCCATCCTGCTGCATTGGCAATGAAGAAGTATGGCATGTCAAGCTGGGAGCTCTGCAAGGCATGCTTTGCCAGGGAGCTATTATTGATGAAGCGCAATTCTTTTATCTACATTTTCAAGACTTCCCAGATAACAATAATGGCTTTGGTAACCTTGACTGTATTCCTGAGAACCAATATGCACCATGAGACGATTGCTGATGGTGGAACTTATTTTGGTGCGCTGTTCTATAGTCTGGTGAATATGATGTTCAATGGCATGGCAGAGCTAGCAATGACAGTTTTCAGACTACCTGTGTACTACAAACAAAGAGAATTATTGTTCTACCCTCCTTGGGCATTTGGTGTATCCTTTCTTCTTGTTAAGATTCCAGTCTCACTATTAGAATCTTCAATATGGGTGCTTATTACATACTATGGGATTGGTTATGCTCCTGCAGCCAGCCGGTTTTTCCGGCAGTTCTTCGCATTTTTCTCTATGCACCAGATGGCTCTTGCCCTTTTTAGATTCATTGGAGCGGCTGGAAGAACAATGGTCATAGCTAATACATTCGGATTTTTTGCCTTGCTAGTAGTTTTTGTATTAGGAGGATTTGTCATCTCCAAAGATGATATTCAGTCTTGGTGGATATGGGGTTACTGGCTTTCGCCATTGATGTATGGTCAAAATGCCGTTTCTATAAATGAATTTCTTGATCCTAGATGGAGCAAGCCAAACAATGACAGTAGCATACATGAACCTACAATCGGAAAGGCACTTCTCAAGTCAAGGTCCATGTTCATTAATGACTATTGGTACTGGATTTCTATCGGAGCCATTTATGGATTTGCTATTCTGTTTAATATTTTCTTCATATTAGCACTGACTTATCTTAATCCCATTAAGAATTCTGAGGCTGTGATGATAAGTGAGGATGAAGAAAATGAGAAAAAAAGCCATGCCGCAACAATGGGAGATGTTTCTGAACTAGCAGAAAGAATCAGATCCAACCACACATCTACTGGTGCAGAAACAGCAACGGATACAATTCCTAGTAATTCTGGCAAAGCCAGAAGCAAGAACGATCAAATTAACCGAGGAATGGTTTTACCTTTCCAGCCTCTTTCTCTAGTATTTGATGATGTGACTTATTACGTGGATATGCCTTCAGAAATGAAAAGTCATGGAGTGCAGGAAAAGCGGCTTCAATTGCTCTGTAACGTGAGCGGCGCATTCAGGCCAGGCGTGCTGACCGCGCTGGTTGGTGTAAGTGGAGCCGGAAAGACCACATTGATGGACGTTTTAGCTGGAAGGAAAACTGGGGGATATATAGAAGGAACCATAAACGTTTCTGGATACCCAAAGAAGCAGGAAACATTTGCGCGGGTTAGTGGTTACTGTGAACAAAACGACATTCACTCGCCCCATGTAACTGTACACGAATCCCTTACATATTCAGCCTGGCTTCGTCTCTCCCCCGAAATAGACAAAAAAACGAGGAAGATGTTTGTGGAAGAGGTTATGAACTTGGTTGAGTTGAATCCTTTAAGGAATGCTCTGGTGGGGCTTCCGGGTGTTGATGGCCTATCGACTGAGCAGAGAAAAAGGCTGACAATTGCGGTCGAATTGGTTGCAAATCCTTCAATTATTTTTATGGATGAGCCAACATCTGGCCTTGATGCCAGGGCCGCCGCAATTGTTATGCGGACAGTGAGGAACACCGTGAATACTGGGCGGACAGTGCTGTGTACAATCCATCAGCCTAGCATTGATATTTTCGAAACTTTTGATGAGTTACTTCTAATGAAAAGGGGAGGACAAGTGATATATGCTGGAGAACTTGGGCATCAATCTTCCAAGCTTGTAGAATACTTTGAATCTGTTCCAGGGATTCGCAGAATTACGAAAGGCTATAATCCTGCCACATGGATGCTGGAAGTCACTTCCCCTTCTATCGAAGTTCAGCTGAATCTGGATTTTGCAGAAATCTATTACAATTCGTCCCTTTACCAAAGAAATAAGGAGGTAATCAAGGAGCTGAGCATCCCAGCATCCGGCTCCACGGACCTTGCCTTCTCCACAAAGTACTCCCAGAATTTTGTAAATCAATGCGTCGCCTGTCTCTGGAAACAGCATTGGTCTTACTGGAGAAACCCGCCTTACAACGCCATCCGGTACTTCTCCACGGTTGTCAATGGCCTCCTGTTCGGTTCCATGTTTTGGAGGAAGGGTAAAAAGACAGGCAACCAACAGGACATTCTGAATCTAATGGGCGCGGTTTACGCTGCCATGTTCTTCCTGGGAGCTACCAACGGCAACACCGTGCAGCCTGTCGTTGCCATCGAGAGGACCGTTCTTTATCGCGAGAGGGCGGCGGGCATGTTCTCTTCCTTGGCTTACGCATTCGCTCAAGTTAGCATTGAGGCAATCTACGTCGCGGTTCAGAGCCTGATATACACGCTCCTGCTTTTCTCCATGATTGATTTTGAGTGGAGAGCAGACAAGTTCTTCTGGTTCTTCTTCCTCACCTTCATGTGCTTCATGTACTTCACCCTCTATGGCATGATGGCCGTGGCATTGACTCCGAGCTACCAAATCGCCAGCATAGTCTCCACCTTCTTTTACACCTTCTGGAACTTGTTCTGCGGCTTCGCCATACCCAGAAAGGCGATGCCGGATTGGTGGAGTTGGATGTACTGGGCTAATCCTGTGGCATGGACATTATATGGGCTGCTCACTTCCCAGCTGGGGGAGCTGGAGAACCCGGTGGTCATCCCTGGAGAGCCCACCTTGGATGTGAAGACCTTCCTGAAGGACAAGTTCGGGTACGAGCACGATTTCCTTGGCTACGTGGCCTTGGTTCATGTTGCCTTTGTTCTTGTCTTCACCTTCGTCTTCGCCTACTCCATCAAGTTCCTCAACTTCCAGAAGAGATGAGACGCATCATGCCGTGTACTGACCTATCTATTGGATTATAGAAAGAGAGGAGAATGCTTGTATTAGTATATCTTAATGCTGTGGAATTGCATACTTTCTCGTCTTGAATGAGTACATGTCCTGCCTTACCATTGCACCTTCCAGTTTTTTCAGATAGGTATGTATTTTTGTCTGTCATGTCATCTATGCGCAGATAGCTGGCTAACGTTAGAAATGTACATTGTAATCTTCGTTTACATATATGTATCTTCCGGTTAATTTTATTTCAAATGTTTGAGAATAATTACAATCATACAATAAACCGC

Network for GWHGAAEX003092

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14510.5	ABC_trans_N	103	153	2.20E-11
PF00005.26	ABC_tran	178	360	1.10E-14
PF01061.23	ABC2_membrane	514	726	1.80E-40
PF08370.10	PDR_assoc	731	797	7.80E-27
PF00005.26	ABC_tran	895	1046	3.70E-20
PF01061.23	ABC2_membrane	1192	1404	3.10E-54

Protein Sequence

>GWHPAAEX003092
MAAMLSIAPEDPGMISSGRKSWISSSFGDPTDVFRRSIAAEEDEEENLKWAALEKLPTYDRIRKGILRQLGDDGKIFSSEIDLQKLSIQDRKILVDRILKIVEEDNERFLKRHRDRFNHVGLEIPKIEVRFENLSVEADAYVGGRALPTLWNATINSLEGLFGFIKLGQSKKRVNKILSDVSGTLKPSRMSLLLGPPGSGKTTLLLALAGRIDKTLRVSGKITYCGHELSEFFPQRTSAYISQHDIHIGEMTVRETFNFSGRCLGVGTRYELMSELTRRERDAGIKPDPEIDAFMKAVSVGGQNSSLATDYILKVLGLDICADIIVGDEMRRGISGGQKKRVTTGEMLAGPARALFMDEISTGLDSSTTFQIVKFIRQMVHVMDGTVLISLLQPAPETFELFDDVILLSEGKIAYQGPRENVLTFFEFMGFKCPERKGVADFLQEVTSRKDQQQYWFREDQPYRYIPVSEFSDSFKEFYIGKSLTEYLKTPFDKSATHPAALAMKKYGMSSWELCKACFARELLLMKRNSFIYIFKTSQITIMALVTLTVFLRTNMHHETIADGGTYFGALFYSLVNMMFNGMAELAMTVFRLPVYYKQRELLFYPPWAFGVSFLLVKIPVSLLESSIWVLITYYGIGYAPAASRFFRQFFAFFSMHQMALALFRFIGAAGRTMVIANTFGFFALLVVFVLGGFVISKDDIQSWWIWGYWLSPLMYGQNAVSINEFLDPRWSKPNNDSSIHEPTIGKALLKSRSMFINDYWYWISIGAIYGFAILFNIFFILALTYLNPIKNSEAVMISEDEENEKKSHAATMGDVSELAERIRSNHTSTGAETATDTIPSNSGKARSKNDQINRGMVLPFQPLSLVFDDVTYYVDMPSEMKSHGVQEKRLQLLCNVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGYIEGTINVSGYPKKQETFARVSGYCEQNDIHSPHVTVHESLTYSAWLRLSPEIDKKTRKMFVEEVMNLVELNPLRNALVGLPGVDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVNTGRTVLCTIHQPSIDIFETFDELLLMKRGGQVIYAGELGHQSSKLVEYFESVPGIRRITKGYNPATWMLEVTSPSIEVQLNLDFAEIYYNSSLYQRNKEVIKELSIPASGSTDLAFSTKYSQNFVNQCVACLWKQHWSYWRNPPYNAIRYFSTVVNGLLFGSMFWRKGKKTGNQQDILNLMGAVYAAMFFLGATNGNTVQPVVAIERTVLYRERAAGMFSSLAYAFAQVSIEAIYVAVQSLIYTLLLFSMIDFEWRADKFFWFFFLTFMCFMYFTLYGMMAVALTPSYQIASIVSTFFYTFWNLFCGFAIPRKAMPDWWSWMYWANPVAWTLYGLLTSQLGELENPVVIPGEPTLDVKTFLKDKFGYEHDFLGYVALVHVAFVLVFTFVFAYSIKFLNFQKR

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0016887	Molecular Function	ATPase activity
GO:0005524	Molecular Function	ATP binding
GO:0016020	Cellular Component	membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	31.080
SRP064423	SRR2545915	Juvenile tuber	45.690
SRP108465	SRR5643513	five period of Gastrodia elata	76.820
	SRR5643514	five period of Gastrodia elata	62.330
	SRR5643515	five period of Gastrodia elata	70.780
	SRR5643524	five period of Gastrodia elata	75.620
	SRR5643525	five period of Gastrodia elata	23.440
	SRR5643528	five period of Gastrodia elata	10.870
	SRR5643658	five period of Gastrodia elata	7.810
	SRR5643659	five period of Gastrodia elata	45.770
	SRR5643660	five period of Gastrodia elata	36.940
	SRR5643661	five period of Gastrodia elata	52.160
	SRR5643662	five period of Gastrodia elata	58.410
	SRR5643663	five period of Gastrodia elata	33.630
	SRR5643664	five period of Gastrodia elata	18.930
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	47.570
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	57.430
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	54.450
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	58.740
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	45.860
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	49.260
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	48.990
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	85.630
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	55.990
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	39.460
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	35.820
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	35.820
SRP279888	Gastro	Gastrodia elata tuber	21.57
	Juven	Juvenile tuber	83.43
	Mother_Gastro	Mother tuber of Gastrodia elata	12.16
	Mother_Juven	Mother tuber of Juvenile	35.28