Detail information of GWHGAAEX003096/evm.TU.scaffold_13.105


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|315122746|ref|YP_004063235.1|4.00E-1450S ribosomal protein L12 [Candidatus Liberibacter solanacearum CLso-ZC1]
KOGKOG17153.00E-54Mitochondrial/chloroplast ribosomal protein L12
nrgi|658057652|ref|XP_008364609.1|4.94E-71PREDICTED: 50S ribosomal protein L12, chloroplastic-like [Malus domestica]
Swissprottr|Q1ACG9|RK12_CHAVU5.00E-1350S ribosomal protein L12, chloroplastic {ECO:0000255|HAMAP-Rule:MF_00368}
trEMBLtr|M5WNH8|M5WNH8_PRUPE1.00E-70Uncharacterized protein {ECO:0000313|EMBL:EMJ10833.1}
TAIRAT3G060403.00E-54Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000754979465498509-
Transcript Sequence

Network for GWHGAAEX003096

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00542.18Ribosomal_L121201835.30E-21
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02935RP-L7, MRPL12, rplL Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms26.230
SRR2545915Juvenile tuber19.720
SRP108465SRR5643513five period of Gastrodia elata26.860
SRR5643514five period of Gastrodia elata29.490
SRR5643515five period of Gastrodia elata28.020
SRR5643524five period of Gastrodia elata24.710
SRR5643525five period of Gastrodia elata28.850
SRR5643528five period of Gastrodia elata31.920
SRR5643658five period of Gastrodia elata32.110
SRR5643659five period of Gastrodia elata23.010
SRR5643660five period of Gastrodia elata25.370
SRR5643661five period of Gastrodia elata20.480
SRR5643662five period of Gastrodia elata25.170
SRR5643663five period of Gastrodia elata19.780
SRR5643664five period of Gastrodia elata21.700
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_126.830
SRR6049655Rhizomagastrodiae_C368-T10_good_122.980
SRR6049656Rhizomagastrodiae_C368-T07_good_132.570
SRR6049657Rhizomagastrodiae_C368-T07_good_123.050
SRR6049658Rhizomagastrodiae_C368-T04_good_131.030
SRR6049659Rhizomagastrodiae_C368-T04_good_132.620
SRR6049660Rhizomagastrodiae_C368-T01_good_126.290
SRR6049661Rhizomagastrodiae_C368-T04_good_123.930
SRR6049662Rhizomagastrodiae_C368-T01_good_133.680
SRR6049663Rhizomagastrodiae_C368-T01_good_130.940
SRR6049664Rhizomagastrodiae_C368-T10_good_145.450
SRR6049665Rhizomagastrodiae_C368-T10_good_145.450
SRP279888GastroGastrodia elata tuber 26.92
JuvenJuvenile tuber17.83
Mother_GastroMother tuber of Gastrodia elata 37.82
Mother_JuvenMother tuber of Juvenile 18.94