Detail information of GWHGAAEX003101/evm.TU.scaffold_13.112
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|219850847|ref|YP_002465279.1| | 5.00E-22 | 50S ribosomal protein L1P [Methanosphaerula palustris E1-9c] |
| KOG | KOG1570 | 7.00E-124 | 60S ribosomal protein L10A |
| nr | gi|672173669|ref|XP_008806967.1| | 8.16E-139 | PREDICTED: 60S ribosomal protein L10a-2 [Phoenix dactylifera] |
| Swissprot | tr|Q8VZB9|R10A1_ARATH | 6.00E-125 | 60S ribosomal protein L10a-1 |
| trEMBL | tr|B3TLQ8|B3TLQ8_ELAGV | 1.00E-135 | Ribosomal protein {ECO:0000256|RuleBase:RU000659} |
| TAIR | AT5G22440 | 7.00E-124 | Ribosomal protein L1p/L10e family |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000007 | 5838428 | 5852860 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003101
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00687.20 | Ribosomal_L1 | 23 | 210 | 4.20E-44 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02865 | RP-L10Ae, RPL10A | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0015934 | Cellular Component | large ribosomal subunit |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 92.120 |
| SRR2545915 | Juvenile tuber | 102.450 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 129.700 |
| SRR5643514 | five period of Gastrodia elata | 139.900 | |
| SRR5643515 | five period of Gastrodia elata | 120.180 | |
| SRR5643524 | five period of Gastrodia elata | 125.020 | |
| SRR5643525 | five period of Gastrodia elata | 87.290 | |
| SRR5643528 | five period of Gastrodia elata | 118.760 | |
| SRR5643658 | five period of Gastrodia elata | 104.950 | |
| SRR5643659 | five period of Gastrodia elata | 122.580 | |
| SRR5643660 | five period of Gastrodia elata | 118.830 | |
| SRR5643661 | five period of Gastrodia elata | 125.060 | |
| SRR5643662 | five period of Gastrodia elata | 114.710 | |
| SRR5643663 | five period of Gastrodia elata | 113.840 | |
| SRR5643664 | five period of Gastrodia elata | 114.220 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 113.320 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 279.270 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 131.210 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 109.810 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 104.010 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 101.420 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 108.540 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 109.310 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 131.520 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 118.630 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 170.490 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 170.490 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 119.27 |
| Juven | Juvenile tuber | 118.48 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 71.52 | |
| Mother_Juven | Mother tuber of Juvenile | 90.55 |