Detail information of GWHGAAEX003109/evm.TU.scaffold_13.124


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|512550830|ref|YP_008088736.1|8.00E-108isocitrate dehydrogenase, NAD-dependent,mitochondrial type [Chthonomonas calidirosea T49]
KOGKOG07840Isocitrate dehydrogenase, gamma subunit
nrgi|720030196|ref|XP_010265449.1|0PREDICTED: isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial isoform X1 [Nelumbo nucifera]
Swissprottr|Q8LFC0|IDH1_ARATH0Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial (Precursor)
trEMBLtr|M0TYB7|M0TYB7_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P07580_001}
TAIRAT4G352600isocitrate dehydrogenase 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000000763330656368604-
Transcript Sequence

Network for GWHGAAEX003109

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00180.19Iso_dh483708.80E-79
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K00030IDH3 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Microbial metabolism in diverse environmentsmap01120
Biosynthesis of antibioticsmap01130
Carbon metabolismmap01200
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Citrate cycle (TCA cycle)map00020

Gene Ontology

GO term OntologyName
GO:0055114Biological Processoxidation-reduction process
GO:0006099Biological Processtricarboxylic acid cycle
GO:0004449Molecular Functionisocitrate dehydrogenase (NAD+) activity
GO:0016616Molecular Functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms20.930
SRR2545915Juvenile tuber19.740
SRP108465SRR5643513five period of Gastrodia elata30.010
SRR5643514five period of Gastrodia elata29.660
SRR5643515five period of Gastrodia elata30.260
SRR5643524five period of Gastrodia elata34.750
SRR5643525five period of Gastrodia elata27.010
SRR5643528five period of Gastrodia elata31.700
SRR5643658five period of Gastrodia elata15.740
SRR5643659five period of Gastrodia elata32.460
SRR5643660five period of Gastrodia elata31.930
SRR5643661five period of Gastrodia elata31.810
SRR5643662five period of Gastrodia elata31.520
SRR5643663five period of Gastrodia elata32.830
SRR5643664five period of Gastrodia elata28.030
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_130.060
SRR6049655Rhizomagastrodiae_C368-T10_good_138.120
SRR6049656Rhizomagastrodiae_C368-T07_good_135.820
SRR6049657Rhizomagastrodiae_C368-T07_good_124.580
SRR6049658Rhizomagastrodiae_C368-T04_good_126.130
SRR6049659Rhizomagastrodiae_C368-T04_good_123.430
SRR6049660Rhizomagastrodiae_C368-T01_good_124.460
SRR6049661Rhizomagastrodiae_C368-T04_good_125.180
SRR6049662Rhizomagastrodiae_C368-T01_good_144.720
SRR6049663Rhizomagastrodiae_C368-T01_good_138.310
SRR6049664Rhizomagastrodiae_C368-T10_good_147.660
SRR6049665Rhizomagastrodiae_C368-T10_good_147.660
SRP279888GastroGastrodia elata tuber 24.59
JuvenJuvenile tuber25.04
Mother_GastroMother tuber of Gastrodia elata 19.45
Mother_JuvenMother tuber of Juvenile 23.75