Detail information of GWHGAAEX003110/evm.TU.scaffold_13.127
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|408402710|ref|YP_006860693.1| | 1.00E-16 | 50S ribosomal protein L1p [Candidatus Nitrososphaera gargensis Ga9.2] |
| KOG | KOG1570 | 5.00E-109 | 60S ribosomal protein L10A |
| nr | gi|672173669|ref|XP_008806967.1| | 7.72E-122 | PREDICTED: 60S ribosomal protein L10a-2 [Phoenix dactylifera] |
| Swissprot | tr|Q8VZB9|R10A1_ARATH | 4.00E-110 | 60S ribosomal protein L10a-1 |
| trEMBL | tr|B3TLQ8|B3TLQ8_ELAGV | 5.00E-119 | Ribosomal protein {ECO:0000256|RuleBase:RU000659} |
| TAIR | AT5G22440 | 5.00E-109 | Ribosomal protein L1p/L10e family |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000007 | 6549506 | 6564760 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX003110
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00687.20 | Ribosomal_L1 | 61 | 237 | 1.90E-38 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02865 | RP-L10Ae, RPL10A | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0015934 | Cellular Component | large ribosomal subunit |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 166.200 |
| SRR2545915 | Juvenile tuber | 171.090 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 182.750 |
| SRR5643514 | five period of Gastrodia elata | 175.690 | |
| SRR5643515 | five period of Gastrodia elata | 155.420 | |
| SRR5643524 | five period of Gastrodia elata | 160.240 | |
| SRR5643525 | five period of Gastrodia elata | 89.190 | |
| SRR5643528 | five period of Gastrodia elata | 136.480 | |
| SRR5643658 | five period of Gastrodia elata | 108.600 | |
| SRR5643659 | five period of Gastrodia elata | 142.520 | |
| SRR5643660 | five period of Gastrodia elata | 139.080 | |
| SRR5643661 | five period of Gastrodia elata | 161.200 | |
| SRR5643662 | five period of Gastrodia elata | 127.740 | |
| SRR5643663 | five period of Gastrodia elata | 125.500 | |
| SRR5643664 | five period of Gastrodia elata | 116.250 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 161.190 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 346.210 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 181.390 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 147.640 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 145.840 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 133.130 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 152.090 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 143.110 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 197.070 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 168.570 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 242.410 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 242.410 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 170.17 |
| Juven | Juvenile tuber | 169.34 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 96.42 | |
| Mother_Juven | Mother tuber of Juvenile | 123.36 |